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Mutant Information

Mutant Name	FN971-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN971-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6991 G-C Hetero INTRON
SBS Chr1 517944 C-T Hetero INTERGENIC
SBS Chr1 7553907 C-A Hetero INTERGENIC
SBS Chr1 21748831 T-A Hetero INTERGENIC
SBS Chr1 23380178 C-A Homo INTERGENIC
SBS Chr1 23380229 T-A Homo INTERGENIC
SBS Chr1 23380230 G-A Homo INTERGENIC
SBS Chr1 27862510 A-T Homo INTRON
SBS Chr1 34983322 C-T Hetero INTERGENIC
SBS Chr1 37531884 A-G Hetero UTR_3_PRIME
SBS Chr2 8456395 T-C Hetero INTERGENIC
SBS Chr2 12434004 C-T Homo INTERGENIC
SBS Chr2 25625148 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 35122785 T-C Hetero INTRON
SBS Chr3 10150797 T-G Hetero INTERGENIC
SBS Chr3 16463259 G-A Hetero INTERGENIC
SBS Chr3 23484968 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g252500
SBS Chr3 25855365 T-A Hetero INTERGENIC
SBS Chr4 5340891 A-G Hetero INTERGENIC
SBS Chr4 7310724 A-T Homo INTERGENIC
SBS Chr4 16483635 C-T Hetero INTRON
SBS Chr4 21508255 C-A Hetero INTERGENIC
SBS Chr4 31943511 T-C Homo INTERGENIC
SBS Chr5 26114356 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g230700
SBS Chr6 21651128 C-T Hetero INTERGENIC
SBS Chr7 6155906 C-A Hetero INTRON
SBS Chr8 10418641 C-A Hetero INTERGENIC
SBS Chr9 2590444 C-T Hetero INTRON
SBS Chr9 6465191 A-T Homo INTERGENIC
SBS Chr9 18279290 A-G Hetero UTR_3_PRIME
SBS Chr11 12647666 C-A Homo INTERGENIC
SBS Chr11 18847504 G-A Hetero INTERGENIC
SBS Chr11 28119800 A-T Hetero UTR_5_PRIME
SBS Chr11 28267311 T-C Hetero INTERGENIC
SBS Chr12 16049404 G-A Hetero INTERGENIC
SBS Chr12 20242086 T-G Hetero INTERGENIC
SBS Chr12 21704562 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1649082 1649089 7
Deletion Chr11 7162733 7162737 4
Deletion Chr5 7670378 7670379 1
Deletion Chr10 8039848 8039862 14
Deletion Chr6 9668642 9668646 4
Deletion Chr3 10901742 10901744 2
Deletion Chr6 13677389 13677391 2
Deletion Chr6 15986521 15986522 1
Deletion Chr11 17665019 17665022 3 OsKitaake11g138500
Deletion Chr3 19726828 19726829 1
Deletion Chr11 20343768 20343773 5
Deletion Chr3 34402288 34402289 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 5552618 5552621 2
Insertion Chr8 9073214 9073218 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 32267255 32848714 OsKitaake02g337000
Inversion Chr2 32267285 32851958 OsKitaake02g337100

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 14515913 Chr7 10173261 OsKitaake07g100100
Translocation Chr3 15648111 Chr1 23367098
Translocation Chr3 15648120 Chr1 23364512 OsKitaake01g223600
Translocation Chr12 23705357 Chr1 38806292 OsKitaake12g190600
Translocation Chr12 23705359 Chr1 38806719 OsKitaake12g190600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6991	G-C	Hetero	INTRON
SBS	Chr1	517944	C-T	Hetero	INTERGENIC
SBS	Chr1	7553907	C-A	Hetero	INTERGENIC
SBS	Chr1	21748831	T-A	Hetero	INTERGENIC
SBS	Chr1	23380178	C-A	Homo	INTERGENIC
SBS	Chr1	23380229	T-A	Homo	INTERGENIC
SBS	Chr1	23380230	G-A	Homo	INTERGENIC
SBS	Chr1	27862510	A-T	Homo	INTRON
SBS	Chr1	34983322	C-T	Hetero	INTERGENIC
SBS	Chr1	37531884	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	8456395	T-C	Hetero	INTERGENIC
SBS	Chr2	12434004	C-T	Homo	INTERGENIC
SBS	Chr2	25625148	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	35122785	T-C	Hetero	INTRON
SBS	Chr3	10150797	T-G	Hetero	INTERGENIC
SBS	Chr3	16463259	G-A	Hetero	INTERGENIC
SBS	Chr3	23484968	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g252500
SBS	Chr3	25855365	T-A	Hetero	INTERGENIC
SBS	Chr4	5340891	A-G	Hetero	INTERGENIC
SBS	Chr4	7310724	A-T	Homo	INTERGENIC
SBS	Chr4	16483635	C-T	Hetero	INTRON
SBS	Chr4	21508255	C-A	Hetero	INTERGENIC
SBS	Chr4	31943511	T-C	Homo	INTERGENIC
SBS	Chr5	26114356	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g230700
SBS	Chr6	21651128	C-T	Hetero	INTERGENIC
SBS	Chr7	6155906	C-A	Hetero	INTRON
SBS	Chr8	10418641	C-A	Hetero	INTERGENIC
SBS	Chr9	2590444	C-T	Hetero	INTRON
SBS	Chr9	6465191	A-T	Homo	INTERGENIC
SBS	Chr9	18279290	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	12647666	C-A	Homo	INTERGENIC
SBS	Chr11	18847504	G-A	Hetero	INTERGENIC
SBS	Chr11	28119800	A-T	Hetero	UTR_5_PRIME
SBS	Chr11	28267311	T-C	Hetero	INTERGENIC
SBS	Chr12	16049404	G-A	Hetero	INTERGENIC
SBS	Chr12	20242086	T-G	Hetero	INTERGENIC
SBS	Chr12	21704562	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1649082	1649089	7
Deletion	Chr11	7162733	7162737	4
Deletion	Chr5	7670378	7670379	1
Deletion	Chr10	8039848	8039862	14
Deletion	Chr6	9668642	9668646	4
Deletion	Chr3	10901742	10901744	2
Deletion	Chr6	13677389	13677391	2
Deletion	Chr6	15986521	15986522	1
Deletion	Chr11	17665019	17665022	3	OsKitaake11g138500
Deletion	Chr3	19726828	19726829	1
Deletion	Chr11	20343768	20343773	5
Deletion	Chr3	34402288	34402289	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	32267255	32848714	OsKitaake02g337000
Inversion	Chr2	32267285	32851958	OsKitaake02g337100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes