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Mutant Information

Mutant Name	FN972-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN972-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18196125 A-C Hetero INTERGENIC
SBS Chr1 18199886 A-C Hetero INTERGENIC
SBS Chr1 19842851 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g197500
SBS Chr1 30911168 G-T Hetero INTERGENIC
SBS Chr2 25356790 T-C Hetero INTERGENIC
SBS Chr2 27645092 T-G Hetero INTERGENIC
SBS Chr2 30454115 G-C Homo INTERGENIC
SBS Chr2 32763381 C-T Homo INTERGENIC
SBS Chr3 10483927 G-A Homo INTRON
SBS Chr3 14845966 G-A Homo INTERGENIC
SBS Chr4 20762742 C-T Hetero INTERGENIC
SBS Chr5 15374183 C-G Hetero INTERGENIC
SBS Chr5 30066769 A-T Homo INTERGENIC
SBS Chr6 229570 T-C Hetero UTR_3_PRIME
SBS Chr6 17635617 G-A Hetero INTERGENIC
SBS Chr6 27837359 C-T Hetero INTERGENIC
SBS Chr7 14565611 C-A Homo INTERGENIC
SBS Chr7 19549121 A-C Hetero INTERGENIC
SBS Chr7 26344270 C-T Hetero INTERGENIC
SBS Chr8 10245459 C-T Hetero INTERGENIC
SBS Chr9 10780998 A-G Homo INTERGENIC
SBS Chr10 2982724 C-T Hetero INTERGENIC
SBS Chr10 14828727 T-A Hetero INTERGENIC
SBS Chr10 15824818 G-C Hetero INTERGENIC
SBS Chr10 18399169 T-C Hetero INTERGENIC
SBS Chr10 19742028 A-T Hetero INTERGENIC
SBS Chr11 1829911 T-A Homo INTRON
SBS Chr11 8207255 C-A Homo INTERGENIC
SBS Chr11 13934297 C-A Homo INTERGENIC
SBS Chr11 13994024 G-A Homo INTERGENIC
SBS Chr11 16183711 C-T Hetero INTERGENIC
SBS Chr11 19993498 G-C Homo INTERGENIC
SBS Chr12 5158689 T-C Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 911861 911863 2
Deletion Chr5 4070341 4070343 2
Deletion Chr6 4752175 4752176 1
Deletion Chr6 9259877 9259881 4
Deletion Chr6 9979734 9979737 3
Deletion Chr10 10761697 10761700 3
Deletion Chr9 15468249 15468256 7
Deletion Chr3 16924869 16924879 10
Deletion Chr1 23938818 23938824 6
Deletion Chr11 24705142 24705153 11
Deletion Chr6 25150124 25150137 13
Deletion Chr11 27640885 27640995 110

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8871715 8871718 2
Insertion Chr2 29830062 29830065 2
Insertion Chr7 4649935 4649938 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 7825734 7977013
Inversion Chr8 7825737 7977018

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 19613145 Chr1 40858002 2
Translocation Chr8 19613153 Chr1 40861694 OsKitaake08g144000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18196125	A-C	Hetero	INTERGENIC
SBS	Chr1	18199886	A-C	Hetero	INTERGENIC
SBS	Chr1	19842851	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g197500
SBS	Chr1	30911168	G-T	Hetero	INTERGENIC
SBS	Chr2	25356790	T-C	Hetero	INTERGENIC
SBS	Chr2	27645092	T-G	Hetero	INTERGENIC
SBS	Chr2	30454115	G-C	Homo	INTERGENIC
SBS	Chr2	32763381	C-T	Homo	INTERGENIC
SBS	Chr3	10483927	G-A	Homo	INTRON
SBS	Chr3	14845966	G-A	Homo	INTERGENIC
SBS	Chr4	20762742	C-T	Hetero	INTERGENIC
SBS	Chr5	15374183	C-G	Hetero	INTERGENIC
SBS	Chr5	30066769	A-T	Homo	INTERGENIC
SBS	Chr6	229570	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	17635617	G-A	Hetero	INTERGENIC
SBS	Chr6	27837359	C-T	Hetero	INTERGENIC
SBS	Chr7	14565611	C-A	Homo	INTERGENIC
SBS	Chr7	19549121	A-C	Hetero	INTERGENIC
SBS	Chr7	26344270	C-T	Hetero	INTERGENIC
SBS	Chr8	10245459	C-T	Hetero	INTERGENIC
SBS	Chr9	10780998	A-G	Homo	INTERGENIC
SBS	Chr10	2982724	C-T	Hetero	INTERGENIC
SBS	Chr10	14828727	T-A	Hetero	INTERGENIC
SBS	Chr10	15824818	G-C	Hetero	INTERGENIC
SBS	Chr10	18399169	T-C	Hetero	INTERGENIC
SBS	Chr10	19742028	A-T	Hetero	INTERGENIC
SBS	Chr11	1829911	T-A	Homo	INTRON
SBS	Chr11	8207255	C-A	Homo	INTERGENIC
SBS	Chr11	13934297	C-A	Homo	INTERGENIC
SBS	Chr11	13994024	G-A	Homo	INTERGENIC
SBS	Chr11	16183711	C-T	Hetero	INTERGENIC
SBS	Chr11	19993498	G-C	Homo	INTERGENIC
SBS	Chr12	5158689	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	911861	911863	2
Deletion	Chr5	4070341	4070343	2
Deletion	Chr6	4752175	4752176	1
Deletion	Chr6	9259877	9259881	4
Deletion	Chr6	9979734	9979737	3
Deletion	Chr10	10761697	10761700	3
Deletion	Chr9	15468249	15468256	7
Deletion	Chr3	16924869	16924879	10
Deletion	Chr1	23938818	23938824	6
Deletion	Chr11	24705142	24705153	11
Deletion	Chr6	25150124	25150137	13
Deletion	Chr11	27640885	27640995	110

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	7825734	7977013
Inversion	Chr8	7825737	7977018

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes