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Mutant Information

Mutant Name	FN973-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN973-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 54

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5433908 A-G Hetero INTERGENIC
SBS Chr1 8190121 A-T Homo INTERGENIC
SBS Chr1 13839272 C-T Hetero INTERGENIC
SBS Chr1 21964107 C-T Homo STOP_GAINED OsKitaake01g211300
SBS Chr1 22488127 C-A Homo INTERGENIC
SBS Chr1 22488128 C-T Homo INTERGENIC
SBS Chr1 30711093 G-T Homo INTERGENIC
SBS Chr1 32380211 A-T Hetero INTRON
SBS Chr1 33839691 A-T Hetero INTERGENIC
SBS Chr1 37163128 G-A Hetero INTERGENIC
SBS Chr2 11926889 T-C Hetero INTERGENIC
SBS Chr2 22813060 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g221900
SBS Chr2 24641066 A-G Hetero INTERGENIC
SBS Chr2 24727744 A-C Hetero INTERGENIC
SBS Chr2 25692097 T-C Hetero INTERGENIC
SBS Chr3 6696707 T-C Homo INTERGENIC
SBS Chr3 13292989 A-C Hetero INTERGENIC
SBS Chr3 14675998 G-A Hetero INTERGENIC
SBS Chr3 30100103 A-G Hetero INTERGENIC
SBS Chr3 33349164 G-T Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g356200
SBS Chr3 33349169 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g356200
SBS Chr4 12551712 T-C Hetero INTERGENIC
SBS Chr4 16850171 A-C Hetero INTERGENIC
SBS Chr4 16882185 C-T Hetero INTERGENIC
SBS Chr4 29714358 T-A Hetero INTERGENIC
SBS Chr5 11675298 G-A Hetero INTERGENIC
SBS Chr5 11675299 C-A Hetero INTERGENIC
SBS Chr6 7199403 C-T Hetero UTR_3_PRIME
SBS Chr6 18032623 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g165900
SBS Chr7 12225854 T-C Homo INTERGENIC
SBS Chr7 16507096 T-A Homo INTERGENIC
SBS Chr7 16507097 C-G Homo INTERGENIC
SBS Chr8 1701454 T-G Hetero INTRON
SBS Chr8 2481147 A-T Hetero UTR_3_PRIME
SBS Chr8 5736771 G-A Homo INTERGENIC
SBS Chr8 14531850 A-G Homo INTERGENIC
SBS Chr8 19766526 G-A Homo INTRON
SBS Chr9 5044054 A-T Hetero INTRON
SBS Chr9 5231482 G-C Hetero INTERGENIC
SBS Chr9 6380059 G-T Hetero INTERGENIC
SBS Chr9 17791302 C-A Hetero INTERGENIC
SBS Chr10 6428721 T-G Hetero INTERGENIC
SBS Chr11 1094658 T-C Hetero INTERGENIC
SBS Chr11 1346805 T-C Hetero INTERGENIC
SBS Chr11 6633907 T-A Hetero INTERGENIC
SBS Chr11 10754393 A-G Homo INTERGENIC
SBS Chr11 16183511 A-G Homo INTERGENIC
SBS Chr11 16495332 C-T Homo INTERGENIC
SBS Chr11 29475925 A-G Hetero INTERGENIC
SBS Chr12 416034 C-A Hetero UTR_3_PRIME
SBS Chr12 8460881 G-A Hetero INTERGENIC
SBS Chr12 11801973 C-A Hetero INTERGENIC
SBS Chr12 14050131 C-A Hetero INTERGENIC
SBS Chr12 21980734 T-C Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 56230 56232 2
Deletion Chr5 853684 853685 1
Deletion Chr5 2184017 2184018 1
Deletion Chr12 5587207 5587211 4
Deletion Chr1 12108132 12108135 3
Deletion Chr2 12473873 12473878 5
Deletion Chr6 14532001 14853000 320999 15
Deletion Chr6 14858001 15235000 376999 14
Deletion Chr6 15242001 15339000 96999 4
Deletion Chr2 20550466 20550788 322
Deletion Chr1 22035536 22035543 7
Deletion Chr1 22446072 22446083 11
Deletion Chr1 22781204 22781207 3
Deletion Chr5 30015001 30118000 102999 8
Deletion Chr5 30133001 30166000 32999
Deletion Chr5 30172001 30183000 10999
Deletion Chr5 30195001 30206000 10999
Deletion Chr3 30325498 30325501 3

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1685607 1685610 2
Insertion Chr4 36157070 36157072 1
Insertion Chr5 3924185 3924188 2
Insertion Chr5 8799165 8799168 2
Insertion Chr7 26612160 26612166 5
Insertion Chr8 5319637 5319640 2
Insertion Chr12 3924803 3924806 2
Insertion Chr5 30239995 30240003 7

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14474231 15284852
Inversion Chr8 20976473 20979283 OsKitaake08g157400
Inversion Chr8 20976475 20979284 OsKitaake08g157400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5433908	A-G	Hetero	INTERGENIC
SBS	Chr1	8190121	A-T	Homo	INTERGENIC
SBS	Chr1	13839272	C-T	Hetero	INTERGENIC
SBS	Chr1	21964107	C-T	Homo	STOP_GAINED	OsKitaake01g211300
SBS	Chr1	22488127	C-A	Homo	INTERGENIC
SBS	Chr1	22488128	C-T	Homo	INTERGENIC
SBS	Chr1	30711093	G-T	Homo	INTERGENIC
SBS	Chr1	32380211	A-T	Hetero	INTRON
SBS	Chr1	33839691	A-T	Hetero	INTERGENIC
SBS	Chr1	37163128	G-A	Hetero	INTERGENIC
SBS	Chr2	11926889	T-C	Hetero	INTERGENIC
SBS	Chr2	22813060	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g221900
SBS	Chr2	24641066	A-G	Hetero	INTERGENIC
SBS	Chr2	24727744	A-C	Hetero	INTERGENIC
SBS	Chr2	25692097	T-C	Hetero	INTERGENIC
SBS	Chr3	6696707	T-C	Homo	INTERGENIC
SBS	Chr3	13292989	A-C	Hetero	INTERGENIC
SBS	Chr3	14675998	G-A	Hetero	INTERGENIC
SBS	Chr3	30100103	A-G	Hetero	INTERGENIC
SBS	Chr3	33349164	G-T	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g356200
SBS	Chr3	33349169	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g356200
SBS	Chr4	12551712	T-C	Hetero	INTERGENIC
SBS	Chr4	16850171	A-C	Hetero	INTERGENIC
SBS	Chr4	16882185	C-T	Hetero	INTERGENIC
SBS	Chr4	29714358	T-A	Hetero	INTERGENIC
SBS	Chr5	11675298	G-A	Hetero	INTERGENIC
SBS	Chr5	11675299	C-A	Hetero	INTERGENIC
SBS	Chr6	7199403	C-T	Hetero	UTR_3_PRIME
SBS	Chr6	18032623	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g165900
SBS	Chr7	12225854	T-C	Homo	INTERGENIC
SBS	Chr7	16507096	T-A	Homo	INTERGENIC
SBS	Chr7	16507097	C-G	Homo	INTERGENIC
SBS	Chr8	1701454	T-G	Hetero	INTRON
SBS	Chr8	2481147	A-T	Hetero	UTR_3_PRIME
SBS	Chr8	5736771	G-A	Homo	INTERGENIC
SBS	Chr8	14531850	A-G	Homo	INTERGENIC
SBS	Chr8	19766526	G-A	Homo	INTRON
SBS	Chr9	5044054	A-T	Hetero	INTRON
SBS	Chr9	5231482	G-C	Hetero	INTERGENIC
SBS	Chr9	6380059	G-T	Hetero	INTERGENIC
SBS	Chr9	17791302	C-A	Hetero	INTERGENIC
SBS	Chr10	6428721	T-G	Hetero	INTERGENIC
SBS	Chr11	1094658	T-C	Hetero	INTERGENIC
SBS	Chr11	1346805	T-C	Hetero	INTERGENIC
SBS	Chr11	6633907	T-A	Hetero	INTERGENIC
SBS	Chr11	10754393	A-G	Homo	INTERGENIC
SBS	Chr11	16183511	A-G	Homo	INTERGENIC
SBS	Chr11	16495332	C-T	Homo	INTERGENIC
SBS	Chr11	29475925	A-G	Hetero	INTERGENIC
SBS	Chr12	416034	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	8460881	G-A	Hetero	INTERGENIC
SBS	Chr12	11801973	C-A	Hetero	INTERGENIC
SBS	Chr12	14050131	C-A	Hetero	INTERGENIC
SBS	Chr12	21980734	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	56230	56232	2
Deletion	Chr5	853684	853685	1
Deletion	Chr5	2184017	2184018	1
Deletion	Chr12	5587207	5587211	4
Deletion	Chr1	12108132	12108135	3
Deletion	Chr2	12473873	12473878	5
Deletion	Chr6	14532001	14853000	320999	15
Deletion	Chr6	14858001	15235000	376999	14
Deletion	Chr6	15242001	15339000	96999	4
Deletion	Chr2	20550466	20550788	322
Deletion	Chr1	22035536	22035543	7
Deletion	Chr1	22446072	22446083	11
Deletion	Chr1	22781204	22781207	3
Deletion	Chr5	30015001	30118000	102999	8
Deletion	Chr5	30133001	30166000	32999
Deletion	Chr5	30172001	30183000	10999
Deletion	Chr5	30195001	30206000	10999
Deletion	Chr3	30325498	30325501	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14474231	15284852
Inversion	Chr8	20976473	20979283	OsKitaake08g157400
Inversion	Chr8	20976475	20979284	OsKitaake08g157400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes