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| Mutant Information |
|---|
| Mutant Name | FN974-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN974-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5224311 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 5224314 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 8728438 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 36635474 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25117378 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 25734313 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5608332 | T-A | Hetero | INTRON | |
| SBS | Chr3 | 11658451 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g158300 |
| SBS | Chr3 | 20367986 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24027333 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 5655124 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 27939028 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 29048933 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 2743784 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 24419717 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 30992231 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3027919 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 5884065 | C-G | Homo | INTERGENIC | |
| SBS | Chr8 | 438203 | C-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr8 | 6646318 | T-C | Homo | INTERGENIC | |
| SBS | Chr8 | 22318371 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 11038004 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 20266999 | A-G | Homo | INTRON | |
| SBS | Chr12 | 20502159 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 23328006 | G-A | Hetero | INTERGENIC |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 2717817 | 2717819 | 2 | |
| Deletion | Chr8 | 5669321 | 5669328 | 7 | |
| Deletion | Chr11 | 5874156 | 5874164 | 8 | |
| Deletion | Chr8 | 7902001 | 8080000 | 177999 | 14 |
| Deletion | Chr5 | 8551535 | 8551543 | 8 | |
| Deletion | Chr1 | 9418217 | 9418223 | 6 | OsKitaake01g120800 |
| Deletion | Chr10 | 9439804 | 9439807 | 3 | |
| Deletion | Chr7 | 10230252 | 10230254 | 2 | |
| Deletion | Chr12 | 11652227 | 11652538 | 311 | |
| Deletion | Chr10 | 13264002 | 13264003 | 1 | |
| Deletion | Chr9 | 13407640 | 13407641 | 1 | |
| Deletion | Chr1 | 17283622 | 17284286 | 664 | |
| Deletion | Chr9 | 19548009 | 19548014 | 5 | OsKitaake09g159700 |
| Deletion | Chr2 | 19944523 | 19944531 | 8 | |
| Deletion | Chr4 | 21023030 | 21023031 | 1 | |
| Deletion | Chr9 | 21654468 | 21654472 | 4 | |
| Deletion | Chr5 | 21930001 | 21945000 | 14999 | 2 |
| Deletion | Chr8 | 23308125 | 23308131 | 6 | |
| Deletion | Chr2 | 24149169 | 24149171 | 2 | |
| Deletion | Chr1 | 27202091 | 27202097 | 6 | |
| Deletion | Chr2 | 33477000 | 33477004 | 4 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 5401938 | 5401941 | 2 | |
| Insertion | Chr8 | 23382250 | 23382252 | 1 | |
| Insertion | Chr1 | 38196203 | 38196210 | 6 | OsKitaake01g407400  |
| Insertion | Chr3 | 6885482 | 6885485 | 2 | OsKitaake03g097400 |
| Insertion | Chr3 | 16744382 | 16744384 | 1 | |
| Insertion | Chr5 | 25240039 | 25240042 | 2 |