Search Kitaake

Mutant Information

Mutant Name	FN975-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN975-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1704699 C-A Hetero INTERGENIC
SBS Chr1 16777316 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g178000
SBS Chr1 28751669 C-A Hetero INTERGENIC
SBS Chr1 28751670 T-G Hetero INTERGENIC
SBS Chr1 30899598 T-A Hetero INTRON
SBS Chr2 570916 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g008300
SBS Chr2 10280343 T-A Hetero INTERGENIC
SBS Chr2 11476635 C-T Hetero INTERGENIC
SBS Chr2 19527263 C-A Hetero INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 5028670 A-G Homo INTERGENIC
SBS Chr3 11587494 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 1606536 G-A Hetero INTERGENIC
SBS Chr4 14567049 A-T Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr4 30443927 G-A Hetero INTERGENIC
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr5 21421130 G-A Homo INTERGENIC
SBS Chr5 30203859 G-T Hetero INTERGENIC
SBS Chr6 19836266 G-A Hetero INTERGENIC
SBS Chr6 25377354 G-A Homo INTERGENIC
SBS Chr7 2842456 C-G Hetero INTERGENIC
SBS Chr7 9477344 G-A Hetero INTERGENIC
SBS Chr7 10353191 C-T Hetero INTERGENIC
SBS Chr7 18384962 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g148900
SBS Chr7 18625661 G-T Homo INTERGENIC
SBS Chr7 24152382 A-G Homo INTERGENIC
SBS Chr8 4755910 G-T Hetero INTERGENIC
SBS Chr8 19161230 C-T Hetero INTERGENIC
SBS Chr8 24405893 G-A Homo INTERGENIC
SBS Chr9 4871470 C-T Homo INTERGENIC
SBS Chr9 16266394 A-C Hetero INTERGENIC
SBS Chr11 5422077 T-C Hetero INTERGENIC
SBS Chr11 9524866 G-C Hetero INTERGENIC
SBS Chr11 11305664 C-T Hetero INTERGENIC
SBS Chr11 14674067 G-A Hetero INTERGENIC
SBS Chr11 19082583 G-A Hetero INTERGENIC
SBS Chr11 22475214 C-T Hetero INTERGENIC
SBS Chr11 23190453 C-T Hetero UTR_5_PRIME
SBS Chr12 4942933 A-G Hetero INTRON
SBS Chr12 16024477 G-A Hetero UTR_3_PRIME

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4173001 4178000 4999
Deletion Chr8 5461749 5461751 2
Deletion Chr2 9554311 9554312 1
Deletion Chr2 10619997 10619998 1
Deletion Chr12 14606249 14606250 1
Deletion Chr7 15905293 15905302 9
Deletion Chr4 16140031 16140047 16
Deletion Chr3 20337876 20337877 1
Deletion Chr12 22665073 22665074 1
Deletion Chr1 25344072 25344087 15
Deletion Chr5 28228909 28228914 5
Deletion Chr3 32254876 32254888 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3735830 3735833 2
Insertion Chr4 18345247 18345250 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1770063 2552848 OsKitaake08g029700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1704699	C-A	Hetero	INTERGENIC
SBS	Chr1	16777316	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g178000
SBS	Chr1	28751669	C-A	Hetero	INTERGENIC
SBS	Chr1	28751670	T-G	Hetero	INTERGENIC
SBS	Chr1	30899598	T-A	Hetero	INTRON
SBS	Chr2	570916	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g008300
SBS	Chr2	10280343	T-A	Hetero	INTERGENIC
SBS	Chr2	11476635	C-T	Hetero	INTERGENIC
SBS	Chr2	19527263	C-A	Hetero	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	5028670	A-G	Homo	INTERGENIC
SBS	Chr3	11587494	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	1606536	G-A	Hetero	INTERGENIC
SBS	Chr4	14567049	A-T	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr4	30443927	G-A	Hetero	INTERGENIC
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr5	21421130	G-A	Homo	INTERGENIC
SBS	Chr5	30203859	G-T	Hetero	INTERGENIC
SBS	Chr6	19836266	G-A	Hetero	INTERGENIC
SBS	Chr6	25377354	G-A	Homo	INTERGENIC
SBS	Chr7	2842456	C-G	Hetero	INTERGENIC
SBS	Chr7	9477344	G-A	Hetero	INTERGENIC
SBS	Chr7	10353191	C-T	Hetero	INTERGENIC
SBS	Chr7	18384962	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g148900
SBS	Chr7	18625661	G-T	Homo	INTERGENIC
SBS	Chr7	24152382	A-G	Homo	INTERGENIC
SBS	Chr8	4755910	G-T	Hetero	INTERGENIC
SBS	Chr8	19161230	C-T	Hetero	INTERGENIC
SBS	Chr8	24405893	G-A	Homo	INTERGENIC
SBS	Chr9	4871470	C-T	Homo	INTERGENIC
SBS	Chr9	16266394	A-C	Hetero	INTERGENIC
SBS	Chr11	5422077	T-C	Hetero	INTERGENIC
SBS	Chr11	9524866	G-C	Hetero	INTERGENIC
SBS	Chr11	11305664	C-T	Hetero	INTERGENIC
SBS	Chr11	14674067	G-A	Hetero	INTERGENIC
SBS	Chr11	19082583	G-A	Hetero	INTERGENIC
SBS	Chr11	22475214	C-T	Hetero	INTERGENIC
SBS	Chr11	23190453	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	4942933	A-G	Hetero	INTRON
SBS	Chr12	16024477	G-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4173001	4178000	4999
Deletion	Chr8	5461749	5461751	2
Deletion	Chr2	9554311	9554312	1
Deletion	Chr2	10619997	10619998	1
Deletion	Chr12	14606249	14606250	1
Deletion	Chr7	15905293	15905302	9
Deletion	Chr4	16140031	16140047	16
Deletion	Chr3	20337876	20337877	1
Deletion	Chr12	22665073	22665074	1
Deletion	Chr1	25344072	25344087	15
Deletion	Chr5	28228909	28228914	5
Deletion	Chr3	32254876	32254888	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1770063	2552848	OsKitaake08g029700

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes