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Mutant Information

Mutant Name	FN976-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN976-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Hetero INTRON
SBS Chr1 3252176 C-G Hetero INTERGENIC
SBS Chr1 35456255 C-T Hetero INTERGENIC
SBS Chr1 35673093 G-A Hetero INTERGENIC
SBS Chr2 16872679 C-T Hetero INTERGENIC
SBS Chr2 33108825 G-T Hetero INTERGENIC
SBS Chr4 12240528 A-T Hetero INTERGENIC
SBS Chr4 15602937 T-C Homo INTERGENIC
SBS Chr5 3769362 T-C Hetero INTRON
SBS Chr5 4474661 A-G Hetero INTERGENIC
SBS Chr5 30247330 A-C Hetero INTERGENIC
SBS Chr6 2466160 C-T Hetero INTERGENIC
SBS Chr6 6461269 G-T Hetero INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr7 6420979 A-G Homo INTERGENIC
SBS Chr7 27250892 G-T Homo INTERGENIC
SBS Chr8 4360644 A-G Homo INTERGENIC
SBS Chr8 5590341 C-T Homo INTERGENIC
SBS Chr8 26563206 G-A Hetero INTERGENIC
SBS Chr9 3103714 A-G Homo INTERGENIC
SBS Chr9 6582106 T-C Homo INTERGENIC
SBS Chr9 18733556 A-G Homo INTERGENIC
SBS Chr10 2323378 C-A Hetero INTRON
SBS Chr10 2339251 C-G Hetero INTERGENIC
SBS Chr10 7780838 G-T Hetero INTERGENIC
SBS Chr10 22949454 A-T Hetero INTERGENIC
SBS Chr10 22949455 G-T Hetero INTERGENIC
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7843544 G-A Homo START_GAINED

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 821477 821479 2
Deletion Chr12 2154414 2154419 5
Deletion Chr7 3283296 3283297 1
Deletion Chr9 3631776 3631778 2 OsKitaake09g018900
Deletion Chr1 5416030 5416034 4
Deletion Chr10 6292050 6292054 4
Deletion Chr11 8349585 8349591 6
Deletion Chr3 10548420 10548422 2
Deletion Chr11 11722895 11722907 12
Deletion Chr4 15740314 15740315 1 OsKitaake04g074200
Deletion Chr12 17381966 17381974 8
Deletion Chr2 20214203 20214207 4
Deletion Chr8 20344585 20344586 1
Deletion Chr2 20978539 20978546 7
Deletion Chr1 22703620 22703628 8
Deletion Chr3 22797255 22797260 5
Deletion Chr5 25731914 25731917 3
Deletion Chr6 25759031 25759039 8
Deletion Chr12 26279001 26279002 1
Deletion Chr4 36272993 36273002 9
Deletion Chr2 36767234 36767238 4
Deletion Chr1 39801833 39801848 15
Deletion Chr1 42113423 42113426 3 OsKitaake01g462500

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13053394 13053399 4
Insertion Chr8 16521293 16521296 2
Insertion Chr10 24004403 24004409 5
Insertion Chr5 15513322 15513324 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14600333 14804996

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 21985670 Chr10 12964738

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Hetero	INTRON
SBS	Chr1	3252176	C-G	Hetero	INTERGENIC
SBS	Chr1	35456255	C-T	Hetero	INTERGENIC
SBS	Chr1	35673093	G-A	Hetero	INTERGENIC
SBS	Chr2	16872679	C-T	Hetero	INTERGENIC
SBS	Chr2	33108825	G-T	Hetero	INTERGENIC
SBS	Chr4	12240528	A-T	Hetero	INTERGENIC
SBS	Chr4	15602937	T-C	Homo	INTERGENIC
SBS	Chr5	3769362	T-C	Hetero	INTRON
SBS	Chr5	4474661	A-G	Hetero	INTERGENIC
SBS	Chr5	30247330	A-C	Hetero	INTERGENIC
SBS	Chr6	2466160	C-T	Hetero	INTERGENIC
SBS	Chr6	6461269	G-T	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr7	6420979	A-G	Homo	INTERGENIC
SBS	Chr7	27250892	G-T	Homo	INTERGENIC
SBS	Chr8	4360644	A-G	Homo	INTERGENIC
SBS	Chr8	5590341	C-T	Homo	INTERGENIC
SBS	Chr8	26563206	G-A	Hetero	INTERGENIC
SBS	Chr9	3103714	A-G	Homo	INTERGENIC
SBS	Chr9	6582106	T-C	Homo	INTERGENIC
SBS	Chr9	18733556	A-G	Homo	INTERGENIC
SBS	Chr10	2323378	C-A	Hetero	INTRON
SBS	Chr10	2339251	C-G	Hetero	INTERGENIC
SBS	Chr10	7780838	G-T	Hetero	INTERGENIC
SBS	Chr10	22949454	A-T	Hetero	INTERGENIC
SBS	Chr10	22949455	G-T	Hetero	INTERGENIC
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7843544	G-A	Homo	START_GAINED

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	821477	821479	2
Deletion	Chr12	2154414	2154419	5
Deletion	Chr7	3283296	3283297	1
Deletion	Chr9	3631776	3631778	2	OsKitaake09g018900
Deletion	Chr1	5416030	5416034	4
Deletion	Chr10	6292050	6292054	4
Deletion	Chr11	8349585	8349591	6
Deletion	Chr3	10548420	10548422	2
Deletion	Chr11	11722895	11722907	12
Deletion	Chr4	15740314	15740315	1	OsKitaake04g074200
Deletion	Chr12	17381966	17381974	8
Deletion	Chr2	20214203	20214207	4
Deletion	Chr8	20344585	20344586	1
Deletion	Chr2	20978539	20978546	7
Deletion	Chr1	22703620	22703628	8
Deletion	Chr3	22797255	22797260	5
Deletion	Chr5	25731914	25731917	3
Deletion	Chr6	25759031	25759039	8
Deletion	Chr12	26279001	26279002	1
Deletion	Chr4	36272993	36273002	9
Deletion	Chr2	36767234	36767238	4
Deletion	Chr1	39801833	39801848	15
Deletion	Chr1	42113423	42113426	3	OsKitaake01g462500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14600333	14804996

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes