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Mutant Information

Mutant Name	FN977-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN977-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12262205 G-T Hetero INTRON
SBS Chr2 13541183 C-T Homo UTR_5_PRIME
SBS Chr2 20606349 G-A Homo INTERGENIC
SBS Chr3 16852461 G-A Homo INTERGENIC
SBS Chr3 22520869 A-G Homo INTERGENIC
SBS Chr3 32356672 T-G Hetero INTERGENIC
SBS Chr3 32573286 A-T Hetero INTERGENIC
SBS Chr4 11131217 A-G Homo INTERGENIC
SBS Chr5 6121396 T-C Hetero INTRON
SBS Chr5 7226223 T-A Hetero INTERGENIC
SBS Chr5 27310204 G-C Hetero INTRON
SBS Chr6 2917269 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g039700
SBS Chr7 9832271 G-A Hetero INTERGENIC
SBS Chr7 12283527 C-T Hetero INTERGENIC
SBS Chr8 18034311 G-A Hetero INTERGENIC
SBS Chr8 23282204 G-A Homo INTERGENIC
SBS Chr9 361485 G-A Hetero INTERGENIC
SBS Chr9 6730748 C-G Homo INTERGENIC
SBS Chr10 10844102 C-T Homo INTRON
SBS Chr10 14181204 G-A Homo INTRON
SBS Chr10 18305999 A-G Hetero INTERGENIC
SBS Chr11 23218508 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g184700
SBS Chr11 24066233 G-A Hetero INTERGENIC
SBS Chr11 28407575 A-C Hetero INTERGENIC
SBS Chr12 8563665 T-A Homo INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 6267394 6267395 1
Deletion Chr11 7215001 7226000 10999 2
Deletion Chr2 8660726 8660728 2
Deletion Chr10 11377051 11377056 5
Deletion Chr12 18239254 18239257 3
Deletion Chr5 19656016 19656025 9
Deletion Chr9 20264762 20264764 2
Deletion Chr1 22960202 22960209 7
Deletion Chr7 23143535 23143539 4
Deletion Chr2 25702533 25702534 1 OsKitaake02g254200
Deletion Chr4 26160713 26160714 1
Deletion Chr1 28864064 28864066 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43789355 43789358 2
Insertion Chr9 12736075 12736078 2
Insertion Chr10 5198342 5198345 2
Insertion Chr12 19747177 19747180 2
Insertion Chr9 14214754 14214757 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12262205	G-T	Hetero	INTRON
SBS	Chr2	13541183	C-T	Homo	UTR_5_PRIME
SBS	Chr2	20606349	G-A	Homo	INTERGENIC
SBS	Chr3	16852461	G-A	Homo	INTERGENIC
SBS	Chr3	22520869	A-G	Homo	INTERGENIC
SBS	Chr3	32356672	T-G	Hetero	INTERGENIC
SBS	Chr3	32573286	A-T	Hetero	INTERGENIC
SBS	Chr4	11131217	A-G	Homo	INTERGENIC
SBS	Chr5	6121396	T-C	Hetero	INTRON
SBS	Chr5	7226223	T-A	Hetero	INTERGENIC
SBS	Chr5	27310204	G-C	Hetero	INTRON
SBS	Chr6	2917269	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g039700
SBS	Chr7	9832271	G-A	Hetero	INTERGENIC
SBS	Chr7	12283527	C-T	Hetero	INTERGENIC
SBS	Chr8	18034311	G-A	Hetero	INTERGENIC
SBS	Chr8	23282204	G-A	Homo	INTERGENIC
SBS	Chr9	361485	G-A	Hetero	INTERGENIC
SBS	Chr9	6730748	C-G	Homo	INTERGENIC
SBS	Chr10	10844102	C-T	Homo	INTRON
SBS	Chr10	14181204	G-A	Homo	INTRON
SBS	Chr10	18305999	A-G	Hetero	INTERGENIC
SBS	Chr11	23218508	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g184700
SBS	Chr11	24066233	G-A	Hetero	INTERGENIC
SBS	Chr11	28407575	A-C	Hetero	INTERGENIC
SBS	Chr12	8563665	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	6267394	6267395	1
Deletion	Chr11	7215001	7226000	10999	2
Deletion	Chr2	8660726	8660728	2
Deletion	Chr10	11377051	11377056	5
Deletion	Chr12	18239254	18239257	3
Deletion	Chr5	19656016	19656025	9
Deletion	Chr9	20264762	20264764	2
Deletion	Chr1	22960202	22960209	7
Deletion	Chr7	23143535	23143539	4
Deletion	Chr2	25702533	25702534	1	OsKitaake02g254200
Deletion	Chr4	26160713	26160714	1
Deletion	Chr1	28864064	28864066	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes