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Mutant Information

Mutant Name	FN979-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN979-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5008375 C-T Hetero INTERGENIC
SBS Chr1 5008376 G-T Hetero INTERGENIC
SBS Chr1 11173214 A-T Hetero INTERGENIC
SBS Chr2 15535305 T-A Hetero INTERGENIC
SBS Chr2 29169782 G-A Hetero INTERGENIC
SBS Chr3 18700280 G-A Hetero INTERGENIC
SBS Chr3 30627136 G-A Homo INTRON
SBS Chr4 5146441 G-A Hetero INTERGENIC
SBS Chr4 5620868 C-T Hetero INTERGENIC
SBS Chr4 8146349 C-T Homo INTERGENIC
SBS Chr4 14029374 C-T Hetero INTRON
SBS Chr4 20926332 C-T Hetero INTERGENIC
SBS Chr4 34901981 G-A Homo INTRON
SBS Chr5 8555220 C-T Hetero INTERGENIC
SBS Chr5 19464511 A-C Homo INTRON
SBS Chr6 6165695 T-C Hetero INTERGENIC
SBS Chr6 24409518 A-G Homo INTRON
SBS Chr7 13201767 T-C Homo INTERGENIC
SBS Chr7 21913949 C-T Homo INTERGENIC
SBS Chr8 22717905 G-C Homo INTERGENIC
SBS Chr8 22717914 G-T Homo INTERGENIC
SBS Chr9 7089882 G-A Hetero INTERGENIC
SBS Chr9 12244363 G-A Hetero UTR_5_PRIME
SBS Chr9 20287735 A-G Homo INTERGENIC
SBS Chr10 3650790 C-T Homo INTRON
SBS Chr10 9463513 G-T Homo INTERGENIC
SBS Chr10 21635973 T-C Homo INTERGENIC
SBS Chr11 22147279 T-A Hetero INTERGENIC
SBS Chr12 25365003 T-C Hetero INTERGENIC
SBS Chr12 26390667 A-G Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3891005 3891007 2
Deletion Chr12 6716382 6716384 2
Deletion Chr10 8269928 8269930 2
Deletion Chr12 11657933 11658552 619
Deletion Chr7 11984659 11984660 1
Deletion Chr7 12701413 12701422 9
Deletion Chr1 13251148 13251155 7
Deletion Chr1 16543238 16543243 5
Deletion Chr8 20409057 20409066 9

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 3314139 3314142 2
Insertion Chr1 43966419 43966424 4

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 20343642 Chr1 25701621
Translocation Chr6 20343968 Chr1 25702716 OsKitaake01g249750

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5008375	C-T	Hetero	INTERGENIC
SBS	Chr1	5008376	G-T	Hetero	INTERGENIC
SBS	Chr1	11173214	A-T	Hetero	INTERGENIC
SBS	Chr2	15535305	T-A	Hetero	INTERGENIC
SBS	Chr2	29169782	G-A	Hetero	INTERGENIC
SBS	Chr3	18700280	G-A	Hetero	INTERGENIC
SBS	Chr3	30627136	G-A	Homo	INTRON
SBS	Chr4	5146441	G-A	Hetero	INTERGENIC
SBS	Chr4	5620868	C-T	Hetero	INTERGENIC
SBS	Chr4	8146349	C-T	Homo	INTERGENIC
SBS	Chr4	14029374	C-T	Hetero	INTRON
SBS	Chr4	20926332	C-T	Hetero	INTERGENIC
SBS	Chr4	34901981	G-A	Homo	INTRON
SBS	Chr5	8555220	C-T	Hetero	INTERGENIC
SBS	Chr5	19464511	A-C	Homo	INTRON
SBS	Chr6	6165695	T-C	Hetero	INTERGENIC
SBS	Chr6	24409518	A-G	Homo	INTRON
SBS	Chr7	13201767	T-C	Homo	INTERGENIC
SBS	Chr7	21913949	C-T	Homo	INTERGENIC
SBS	Chr8	22717905	G-C	Homo	INTERGENIC
SBS	Chr8	22717914	G-T	Homo	INTERGENIC
SBS	Chr9	7089882	G-A	Hetero	INTERGENIC
SBS	Chr9	12244363	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	20287735	A-G	Homo	INTERGENIC
SBS	Chr10	3650790	C-T	Homo	INTRON
SBS	Chr10	9463513	G-T	Homo	INTERGENIC
SBS	Chr10	21635973	T-C	Homo	INTERGENIC
SBS	Chr11	22147279	T-A	Hetero	INTERGENIC
SBS	Chr12	25365003	T-C	Hetero	INTERGENIC
SBS	Chr12	26390667	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3891005	3891007	2
Deletion	Chr12	6716382	6716384	2
Deletion	Chr10	8269928	8269930	2
Deletion	Chr12	11657933	11658552	619
Deletion	Chr7	11984659	11984660	1
Deletion	Chr7	12701413	12701422	9
Deletion	Chr1	13251148	13251155	7
Deletion	Chr1	16543238	16543243	5
Deletion	Chr8	20409057	20409066	9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	20343642	Chr1	25701621
Translocation	Chr6	20343968	Chr1	25702716	OsKitaake01g249750

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes