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Mutant Information

Mutant Name	FN980-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN980-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5755041 C-A Hetero INTRON
SBS Chr1 18250436 C-A Hetero INTERGENIC
SBS Chr1 19664430 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g195800
SBS Chr1 24763597 G-C Hetero INTERGENIC
SBS Chr1 38159054 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g407000
SBS Chr1 43726365 G-A Hetero INTERGENIC
SBS Chr1 43726366 G-A Hetero INTERGENIC
SBS Chr1 43726414 G-A Hetero INTERGENIC
SBS Chr1 43726415 C-A Hetero INTERGENIC
SBS Chr3 131245 A-C Hetero INTRON
SBS Chr3 810162 C-T Hetero INTERGENIC
SBS Chr3 810168 A-G Hetero INTERGENIC
SBS Chr3 17609950 C-T Homo INTERGENIC
SBS Chr3 17615175 A-G Homo INTERGENIC
SBS Chr3 29095110 C-G Homo INTRON
SBS Chr4 11091573 C-T Hetero INTERGENIC
SBS Chr4 16754622 T-A Homo INTRON
SBS Chr4 16754623 G-T Homo INTRON
SBS Chr4 19449639 G-A Homo INTERGENIC
SBS Chr4 26063914 G-A Hetero INTRON
SBS Chr5 6419294 A-T Homo UTR_5_PRIME
SBS Chr5 10541714 G-A Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr6 14552760 A-T Hetero INTERGENIC
SBS Chr6 20781641 T-C Hetero INTERGENIC
SBS Chr7 3143991 C-T Homo INTERGENIC
SBS Chr7 7846801 C-T Hetero INTERGENIC
SBS Chr7 15266630 C-T Hetero INTERGENIC
SBS Chr7 29617669 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g285600
SBS Chr10 8638342 T-C Homo INTERGENIC
SBS Chr10 18002222 C-T Homo INTERGENIC
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr10 23182507 G-T Hetero INTERGENIC
SBS Chr12 2145433 C-T Hetero INTERGENIC
SBS Chr12 5296072 C-T Hetero INTERGENIC
SBS Chr12 15150607 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 241776 241778 2
Deletion Chr1 575874 575880 6
Deletion Chr4 707652 707654 2
Deletion Chr5 5704360 5704375 15
Deletion Chr11 9535753 9535754 1
Deletion Chr2 9776339 9776340 1
Deletion Chr10 13885444 13885449 5
Deletion Chr1 15635293 15635296 3
Deletion Chr2 17050924 17050925 1
Deletion Chr3 17618001 17642000 23999 2
Deletion Chr12 18631649 18631652 3
Deletion Chr11 23496091 23496092 1
Deletion Chr12 23812041 23812045 4
Deletion Chr5 23967295 23967297 2
Deletion Chr3 36760513 36760515 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 21368120 21368123 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 26968491 27434865 OsKitaake04g200366
Inversion Chr4 26968493 27434875 OsKitaake04g200366
Inversion Chr1 32687612 32853047 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 1230241 Chr1 31931552 2
Translocation Chr10 1232180 Chr1 32853044 2
Translocation Chr10 16442225 Chr4 24263898
Translocation Chr10 16443076 Chr4 24263898

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5755041	C-A	Hetero	INTRON
SBS	Chr1	18250436	C-A	Hetero	INTERGENIC
SBS	Chr1	19664430	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g195800
SBS	Chr1	24763597	G-C	Hetero	INTERGENIC
SBS	Chr1	38159054	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g407000
SBS	Chr1	43726365	G-A	Hetero	INTERGENIC
SBS	Chr1	43726366	G-A	Hetero	INTERGENIC
SBS	Chr1	43726414	G-A	Hetero	INTERGENIC
SBS	Chr1	43726415	C-A	Hetero	INTERGENIC
SBS	Chr3	131245	A-C	Hetero	INTRON
SBS	Chr3	810162	C-T	Hetero	INTERGENIC
SBS	Chr3	810168	A-G	Hetero	INTERGENIC
SBS	Chr3	17609950	C-T	Homo	INTERGENIC
SBS	Chr3	17615175	A-G	Homo	INTERGENIC
SBS	Chr3	29095110	C-G	Homo	INTRON
SBS	Chr4	11091573	C-T	Hetero	INTERGENIC
SBS	Chr4	16754622	T-A	Homo	INTRON
SBS	Chr4	16754623	G-T	Homo	INTRON
SBS	Chr4	19449639	G-A	Homo	INTERGENIC
SBS	Chr4	26063914	G-A	Hetero	INTRON
SBS	Chr5	6419294	A-T	Homo	UTR_5_PRIME
SBS	Chr5	10541714	G-A	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr6	14552760	A-T	Hetero	INTERGENIC
SBS	Chr6	20781641	T-C	Hetero	INTERGENIC
SBS	Chr7	3143991	C-T	Homo	INTERGENIC
SBS	Chr7	7846801	C-T	Hetero	INTERGENIC
SBS	Chr7	15266630	C-T	Hetero	INTERGENIC
SBS	Chr7	29617669	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g285600
SBS	Chr10	8638342	T-C	Homo	INTERGENIC
SBS	Chr10	18002222	C-T	Homo	INTERGENIC
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr10	23182507	G-T	Hetero	INTERGENIC
SBS	Chr12	2145433	C-T	Hetero	INTERGENIC
SBS	Chr12	5296072	C-T	Hetero	INTERGENIC
SBS	Chr12	15150607	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	241776	241778	2
Deletion	Chr1	575874	575880	6
Deletion	Chr4	707652	707654	2
Deletion	Chr5	5704360	5704375	15
Deletion	Chr11	9535753	9535754	1
Deletion	Chr2	9776339	9776340	1
Deletion	Chr10	13885444	13885449	5
Deletion	Chr1	15635293	15635296	3
Deletion	Chr2	17050924	17050925	1
Deletion	Chr3	17618001	17642000	23999	2
Deletion	Chr12	18631649	18631652	3
Deletion	Chr11	23496091	23496092	1
Deletion	Chr12	23812041	23812045	4
Deletion	Chr5	23967295	23967297	2
Deletion	Chr3	36760513	36760515	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26968491	27434865	OsKitaake04g200366
Inversion	Chr4	26968493	27434875	OsKitaake04g200366
Inversion	Chr1	32687612	32853047	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes