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| Mutant Information |
|---|
| Mutant Name | FN981-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN981-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 40966395 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 847316 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 3135428 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 9578092 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 2113544 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 2221760 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 2983521 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 6145985 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 14700985 | G-C | Homo | INTERGENIC | |
| SBS | Chr4 | 34228630 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13357250 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 15638478 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20872949 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23836776 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12577980 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 27143858 | T-G | Homo | INTRON | |
| SBS | Chr8 | 27171397 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9765843 | A-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3582709 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 7001045 | G-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 29725846 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 5610873 | G-A | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 4089589 | 4089590 | 1 | |
| Deletion | Chr11 | 8733799 | 8733800 | 1 | |
| Deletion | Chr9 | 12098328 | 12098331 | 3 | |
| Deletion | Chr3 | 13187773 | 13187775 | 2 | |
| Deletion | Chr1 | 13956728 | 13956729 | 1 | |
| Deletion | Chr6 | 16492901 | 16492908 | 7 | |
| Deletion | Chr4 | 18119837 | 18119854 | 17 | |
| Deletion | Chr4 | 18121072 | 18121085 | 13 | |
| Deletion | Chr1 | 20909649 | 20909659 | 10 | OsKitaake01g204700 |
| Deletion | Chr1 | 21788083 | 21788089 | 6 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 14439356 | 14439359 | 2 | |
| Insertion | Chr5 | 12527862 | 12527864 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 12781145 | 13751892 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 713069 | Chr3 | 12733762 | |
| Translocation | Chr12 | 716594 | Chr3 | 12733762 |