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Mutant Information

Mutant Name	FN982-Sredo [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN982-Sredo Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1696598 A-G Hetero INTERGENIC
SBS Chr1 17455256 A-T Hetero INTERGENIC
SBS Chr1 20068152 G-A Hetero INTERGENIC
SBS Chr1 27930873 C-T Hetero INTERGENIC
SBS Chr1 37349603 C-G Homo UTR_5_PRIME
SBS Chr1 37368012 A-T Homo INTRON
SBS Chr3 730284 G-C Homo NON_SYNONYMOUS_CODING OsKitaake03g011400
SBS Chr3 2750828 A-T Homo INTERGENIC
SBS Chr3 8351525 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 10523985 G-A Hetero INTERGENIC
SBS Chr3 12110230 T-G Hetero INTERGENIC
SBS Chr3 15696982 A-G Hetero INTERGENIC
SBS Chr3 16531817 T-A Hetero INTERGENIC
SBS Chr4 3292359 T-A Hetero INTERGENIC
SBS Chr4 8247330 T-G Hetero INTRON
SBS Chr4 11862171 G-A Hetero INTERGENIC
SBS Chr4 13435760 A-T Hetero INTERGENIC
SBS Chr4 14406941 G-T Hetero INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr4 30884406 G-T Hetero INTERGENIC
SBS Chr5 4515367 T-C Hetero INTERGENIC
SBS Chr5 10325538 G-A Homo INTERGENIC
SBS Chr6 24345925 C-A Hetero INTERGENIC
SBS Chr7 6163873 G-A Hetero INTERGENIC
SBS Chr7 18677754 G-A Hetero INTERGENIC
SBS Chr7 27309220 G-A Hetero INTERGENIC
SBS Chr7 29188504 A-T Hetero UTR_5_PRIME
SBS Chr8 6114026 A-G Hetero INTERGENIC
SBS Chr8 23002291 T-G Hetero INTERGENIC
SBS Chr8 25732420 C-T Hetero UTR_3_PRIME
SBS Chr8 27156685 C-G Homo NON_SYNONYMOUS_CODING OsKitaake08g222200
SBS Chr9 7596656 G-A Hetero INTERGENIC
SBS Chr9 7716081 T-G Homo INTERGENIC
SBS Chr9 18044947 A-G Hetero INTRON
SBS Chr10 7937324 C-A Homo UTR_3_PRIME
SBS Chr10 13339136 A-G Hetero INTERGENIC
SBS Chr10 15190124 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g096500
SBS Chr12 352542 T-C Hetero INTERGENIC
SBS Chr12 3788366 A-T Hetero INTERGENIC
SBS Chr12 6016828 C-T Hetero INTERGENIC
SBS Chr12 15511626 A-G Hetero INTERGENIC
SBS Chr12 21931029 G-A Homo INTRON

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 32567 32568 1
Deletion Chr7 3331047 3331048 1 OsKitaake07g042200
Deletion Chr10 8132712 8132725 13
Deletion Chr10 13808898 13808903 5
Deletion Chr2 14197887 14197892 5
Deletion Chr2 18961765 18961770 5
Deletion Chr2 24815171 24815183 12
Deletion Chr2 25057569 25057571 2
Deletion Chr1 27960414 27960514 100
Deletion Chr3 28005648 28005649 1
Deletion Chr3 32414514 32414523 9
Deletion Chr1 38162327 38162331 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25453214 25453217 2
Insertion Chr12 3436186 3436189 2
Insertion Chr2 18179771 18179773 1
Insertion Chr5 12594783 12594785 1
Insertion Chr8 6843614 6843617 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 3371892 Chr3 2969839 2
Translocation Chr8 3374008 Chr3 2969836 OsKitaake03g041900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1696598	A-G	Hetero	INTERGENIC
SBS	Chr1	17455256	A-T	Hetero	INTERGENIC
SBS	Chr1	20068152	G-A	Hetero	INTERGENIC
SBS	Chr1	27930873	C-T	Hetero	INTERGENIC
SBS	Chr1	37349603	C-G	Homo	UTR_5_PRIME
SBS	Chr1	37368012	A-T	Homo	INTRON
SBS	Chr3	730284	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g011400
SBS	Chr3	2750828	A-T	Homo	INTERGENIC
SBS	Chr3	8351525	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10523985	G-A	Hetero	INTERGENIC
SBS	Chr3	12110230	T-G	Hetero	INTERGENIC
SBS	Chr3	15696982	A-G	Hetero	INTERGENIC
SBS	Chr3	16531817	T-A	Hetero	INTERGENIC
SBS	Chr4	3292359	T-A	Hetero	INTERGENIC
SBS	Chr4	8247330	T-G	Hetero	INTRON
SBS	Chr4	11862171	G-A	Hetero	INTERGENIC
SBS	Chr4	13435760	A-T	Hetero	INTERGENIC
SBS	Chr4	14406941	G-T	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	30884406	G-T	Hetero	INTERGENIC
SBS	Chr5	4515367	T-C	Hetero	INTERGENIC
SBS	Chr5	10325538	G-A	Homo	INTERGENIC
SBS	Chr6	24345925	C-A	Hetero	INTERGENIC
SBS	Chr7	6163873	G-A	Hetero	INTERGENIC
SBS	Chr7	18677754	G-A	Hetero	INTERGENIC
SBS	Chr7	27309220	G-A	Hetero	INTERGENIC
SBS	Chr7	29188504	A-T	Hetero	UTR_5_PRIME
SBS	Chr8	6114026	A-G	Hetero	INTERGENIC
SBS	Chr8	23002291	T-G	Hetero	INTERGENIC
SBS	Chr8	25732420	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	27156685	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g222200
SBS	Chr9	7596656	G-A	Hetero	INTERGENIC
SBS	Chr9	7716081	T-G	Homo	INTERGENIC
SBS	Chr9	18044947	A-G	Hetero	INTRON
SBS	Chr10	7937324	C-A	Homo	UTR_3_PRIME
SBS	Chr10	13339136	A-G	Hetero	INTERGENIC
SBS	Chr10	15190124	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g096500
SBS	Chr12	352542	T-C	Hetero	INTERGENIC
SBS	Chr12	3788366	A-T	Hetero	INTERGENIC
SBS	Chr12	6016828	C-T	Hetero	INTERGENIC
SBS	Chr12	15511626	A-G	Hetero	INTERGENIC
SBS	Chr12	21931029	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	32567	32568	1
Deletion	Chr7	3331047	3331048	1	OsKitaake07g042200
Deletion	Chr10	8132712	8132725	13
Deletion	Chr10	13808898	13808903	5
Deletion	Chr2	14197887	14197892	5
Deletion	Chr2	18961765	18961770	5
Deletion	Chr2	24815171	24815183	12
Deletion	Chr2	25057569	25057571	2
Deletion	Chr1	27960414	27960514	100
Deletion	Chr3	28005648	28005649	1
Deletion	Chr3	32414514	32414523	9
Deletion	Chr1	38162327	38162331	4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	3371892	Chr3	2969839	2
Translocation	Chr8	3374008	Chr3	2969836	OsKitaake03g041900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes