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| Mutant Information |
|---|
| Mutant Name | FN983-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN983-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5556518 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 17125507 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 27140369 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 6051709 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14692981 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 30848439 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 31629875 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g321880 |
| SBS | Chr3 | 14961220 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g194500 |
| SBS | Chr3 | 15749404 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 18358102 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 307858 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 17680659 | C-T | Hetero | INTRON | |
| SBS | Chr6 | 3780027 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 15774202 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g153100 |
| SBS | Chr6 | 22360220 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 5862036 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g071200 |
| SBS | Chr8 | 4436260 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g050400 |
| SBS | Chr8 | 11132613 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20897041 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 2193405 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 7951741 | G-T | Homo | INTERGENIC | |
| SBS | Chr9 | 7951742 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 20087360 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 11925835 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 19503859 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20184466 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 3072507 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 25499641 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g209600 |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 728429 | 728496 | 67 | |
| Deletion | Chr4 | 2717817 | 2717819 | 2 | |
| Deletion | Chr1 | 10116955 | 10116956 | 1 | |
| Deletion | Chr12 | 11719649 | 11719804 | 155 | |
| Deletion | Chr7 | 13723001 | 13729000 | 5999 | |
| Deletion | Chr2 | 16283309 | 16283311 | 2 | |
| Deletion | Chr11 | 19826173 | 19826175 | 2 | |
| Deletion | Chr2 | 20524001 | 20534000 | 9999 | 2 |
| Deletion | Chr2 | 20541001 | 20724000 | 182999 | 13 |
| Deletion | Chr8 | 26534021 | 26534030 | 9 | OsKitaake08g213200 |
| Deletion | Chr8 | 26729609 | 26729610 | 1 | OsKitaake08g216000 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 13238148 | 13238150 | 1 | |
| Insertion | Chr5 | 12527862 | 12527864 | 1 | |
| Insertion | Chr12 | 16857059 | 16857061 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 20426803 | 20524286 | OsKitaake02g198950 |
| Inversion | Chr2 | 20426807 | 20723646 | OsKitaake02g198950 |
| Inversion | Chr1 | 22075240 | 22153080 | OsKitaake01g211500 |
| Inversion | Chr1 | 22075249 | 22153084 | OsKitaake01g211500 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 16601629 | Chr3 | 15512937 | 2 |