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Mutant Information |
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Mutant Name | FN984-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN984-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Variant Information |
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Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
SBS | Chr1 | 3724734 | A-T | Homo | INTRON | |
SBS | Chr1 | 11624972 | A-C | Hetero | INTERGENIC | |
SBS | Chr1 | 18713002 | T-A | Homo | INTRON | |
SBS | Chr1 | 28576119 | C-T | Hetero | INTRON | |
SBS | Chr2 | 4911740 | T-G | Hetero | INTERGENIC | |
SBS | Chr2 | 11264211 | G-A | Hetero | INTERGENIC | |
SBS | Chr2 | 16396069 | G-A | Hetero | INTRON | |
SBS | Chr2 | 21533581 | C-T | Homo | INTRON | |
SBS | Chr2 | 21816427 | G-T | Homo | INTERGENIC | |
SBS | Chr2 | 22324527 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g216000 |
SBS | Chr2 | 23466301 | G-T | Hetero | INTERGENIC | |
SBS | Chr2 | 26623755 | A-T | Homo | INTERGENIC | |
SBS | Chr3 | 8701674 | G-C | Homo | INTRON | |
SBS | Chr3 | 19268380 | C-A | Hetero | INTERGENIC | |
SBS | Chr3 | 29311439 | C-T | Hetero | INTERGENIC | |
SBS | Chr3 | 30542092 | A-G | Hetero | INTERGENIC | |
SBS | Chr4 | 3524841 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 8832677 | C-T | Hetero | INTERGENIC | |
SBS | Chr4 | 11620544 | G-A | Hetero | INTERGENIC | |
SBS | Chr4 | 16687864 | A-T | Hetero | INTERGENIC | |
SBS | Chr4 | 17127295 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 2663243 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 7129533 | A-T | Hetero | INTERGENIC | |
SBS | Chr6 | 11879472 | C-T | Hetero | INTERGENIC | |
SBS | Chr6 | 24067693 | A-G | Hetero | INTERGENIC | |
SBS | Chr7 | 1313929 | A-T | Hetero | INTRON | |
SBS | Chr7 | 6968576 | C-T | Hetero | INTERGENIC | |
SBS | Chr8 | 3076153 | A-C | Homo | INTERGENIC | |
SBS | Chr9 | 11249656 | A-G | Homo | INTERGENIC | |
SBS | Chr10 | 9640302 | A-T | Hetero | INTERGENIC | |
SBS | Chr10 | 19002258 | C-T | Homo | INTERGENIC | |
SBS | Chr11 | 19276685 | C-A | Hetero | INTRON | |
SBS | Chr12 | 9677225 | G-C | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Deletion | Chr6 | 62771 | 63478 | 707 | |
Deletion | Chr5 | 1692807 | 1692810 | 3 | |
Deletion | Chr10 | 4022590 | 4022594 | 4 | |
Deletion | Chr12 | 6480769 | 6480776 | 7 | |
Deletion | Chr1 | 7475462 | 7475469 | 7 | |
Deletion | Chr7 | 12340679 | 12340680 | 1 | |
Deletion | Chr3 | 13143777 | 13143786 | 9 | |
Deletion | Chr4 | 14385259 | 14385260 | 1 | |
Deletion | Chr5 | 14564830 | 14564833 | 3 | |
Deletion | Chr8 | 16041008 | 16041014 | 6 | |
Deletion | Chr8 | 16069604 | 16069612 | 8 | |
Deletion | Chr1 | 18521241 | 18521245 | 4 | |
Deletion | Chr7 | 18906381 | 18906383 | 2 | |
Deletion | Chr1 | 20648981 | 20648986 | 5 | OsKitaake01g201900 |
Deletion | Chr7 | 22092085 | 22092086 | 1 | |
Deletion | Chr2 | 31763001 | 31772000 | 8999 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
Insertion | Chr5 | 30239995 | 30240003 | 7 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
Inversion | Chr2 | 14058642 | 14232420 | OsKitaake02g152600 |
Inversion | Chr6 | 20788232 | 20811467 | OsKitaake06g185900 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
Translocation | Chr9 | 7057474 | Chr6 | 20788246 | |
Translocation | Chr9 | 7057482 | Chr6 | 20788679 | |
Translocation | Chr9 | 20018487 | Chr8 | 16443197 |