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| Mutant Information |
|---|
| Mutant Name | FN985-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN985-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3633464 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 4116614 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15987480 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 18489607 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 24935853 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 26312011 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g261900 |
| SBS | Chr2 | 26312012 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 27572382 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 7306189 | C-T | Homo | INTRON | |
| SBS | Chr3 | 24802786 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4651083 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13997207 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 29504480 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 18037025 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 19364015 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g151900 |
| SBS | Chr5 | 21705716 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 9800847 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 10993140 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g122300 |
| SBS | Chr6 | 22232179 | T-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g195100 |
| SBS | Chr7 | 4560031 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7292368 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7916250 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16925803 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 28867882 | C-T | Hetero | INTRON | |
| SBS | Chr8 | 7783316 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g071400 |
| SBS | Chr8 | 21149638 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1696676 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11293526 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13045450 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g079300 |
| SBS | Chr11 | 6506536 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 20104746 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 21521246 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 24688007 | A-T | Homo | INTERGENIC | |
| SBS | Chr11 | 29691982 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 17689510 | T-C | Hetero | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 734269 | 734270 | 1 | |
| Deletion | Chr9 | 1677493 | 1677496 | 3 | |
| Deletion | Chr12 | 9398557 | 9398558 | 1 | |
| Deletion | Chr1 | 9943830 | 9944012 | 182 | |
| Deletion | Chr5 | 10710698 | 10710700 | 2 | |
| Deletion | Chr5 | 12515860 | 12515861 | 1 | |
| Deletion | Chr7 | 13724001 | 13730000 | 5999 | |
| Deletion | Chr5 | 15971819 | 15971827 | 8 | |
| Deletion | Chr11 | 17440742 | 17440908 | 166 | |
| Deletion | Chr4 | 25447001 | 25455000 | 7999 | OsKitaake04g174700 |
| Deletion | Chr2 | 33792796 | 33792797 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 14449281 | 14449284 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 20713437 | 21090782 | |
| Inversion | Chr1 | 39277801 | 39650705 | OsKitaake01g428000 |