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| Mutant Information |
|---|
| Mutant Name | FN986-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN986-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 20272154 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 29765450 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 3727104 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20550968 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27626895 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 28375947 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g293500 |
| SBS | Chr4 | 25960362 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 30942159 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 4674502 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 17296678 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 2742387 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 6480756 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 4885218 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 11191690 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7871351 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13238524 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 2467613 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14765295 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 2669274 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 3933392 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13846086 | C-T | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 3560001 | 3625000 | 64999 | 7 |
| Deletion | Chr3 | 5910440 | 5910450 | 10 | |
| Deletion | Chr8 | 15664001 | 15723000 | 58999 | 3 |
| Deletion | Chr1 | 15741982 | 15741989 | 7 | OsKitaake01g171600 |
| Deletion | Chr11 | 18644710 | 18644711 | 1 | OsKitaake11g144500 |
| Deletion | Chr11 | 21134396 | 21134398 | 2 | |
| Deletion | Chr8 | 23649493 | 23649500 | 7 | OsKitaake08g181900 |
| Deletion | Chr1 | 27979189 | 27979197 | 8 | OsKitaake01g271700 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 20042400 | 20042402 | 1 | |
| Insertion | Chr3 | 20043406 | 20043419 | 12 | |
| Insertion | Chr8 | 22826309 | 22826311 | 1 | |
| Insertion | Chr12 | 14779926 | 14779928 | 1 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 13974833 | Chr3 | 27051733 | |
| Translocation | Chr12 | 13975875 | Chr3 | 27051738 | |
| Translocation | Chr4 | 25960434 | Chr1 | 14131656 |