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| Mutant Information |
|---|
| Mutant Name | FN987-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN987-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19847114 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27365940 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33192406 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34095138 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42862666 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 21548767 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 27244143 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 13112619 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 15457284 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 18969581 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 24159239 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 27608714 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 13542081 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 1623410 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26350511 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26350512 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 26350513 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1149980 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20474372 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 29354196 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g282100 |
| SBS | Chr8 | 1503691 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28817914 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8748981 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 13886635 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27756494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 11057727 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 15202963 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 17481057 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 17481058 | C-T | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 3767802 | 3767828 | 26 | |
| Deletion | Chr5 | 5731615 | 5731616 | 1 | |
| Deletion | Chr9 | 13441545 | 13441546 | 1 | |
| Deletion | Chr1 | 13449906 | 13449921 | 15 | |
| Deletion | Chr9 | 15818001 | 15818003 | 2 | |
| Deletion | Chr11 | 20799852 | 20799855 | 3 | |
| Deletion | Chr3 | 20908727 | 20908729 | 2 | |
| Deletion | Chr12 | 24398675 | 24398676 | 1 | |
| Deletion | Chr6 | 24990591 | 24990592 | 1 | |
| Deletion | Chr1 | 26174496 | 26174503 | 7 | OsKitaake01g255100 |
| Deletion | Chr3 | 26893001 | 26903000 | 9999 | OsKitaake03g180000 |
| Deletion | Chr3 | 28201151 | 28201159 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 21590656 | 21590658 | 1 | |
| Insertion | Chr9 | 13906984 | 13906986 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 5874981 | 5919886 | |
| Inversion | Chr9 | 5874992 | 5919885 |