Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN988-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN988-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32613774 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 9420015 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 16045457 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 13265774 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 17686540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20688763 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 21367987 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35040612 | A-C | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 3883382 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 35887642 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 3678543 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6267045 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 10123460 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr6 | 15430320 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 29477324 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 1518958 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 3275668 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 5076169 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 9726219 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11955006 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14592809 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22394237 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 3935980 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 6820188 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9512960 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9967809 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 798396 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g010300 |
| SBS | Chr11 | 1063689 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 3220010 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11109517 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 16524489 | A-C | Hetero | INTRON | |
| SBS | Chr12 | 14641488 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 24705080 | C-T | Homo | INTERGENIC |
Deletions: 23
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 490134 | 490135 | 1 | |
| Deletion | Chr11 | 2341327 | 2341332 | 5 | |
| Deletion | Chr10 | 2885152 | 2885154 | 2 | |
| Deletion | Chr12 | 3504103 | 3504107 | 4 | OsKitaake12g049300 |
| Deletion | Chr5 | 4340319 | 4340320 | 1 | |
| Deletion | Chr5 | 4351845 | 4351849 | 4 | |
| Deletion | Chr2 | 5746895 | 5746896 | 1 | |
| Deletion | Chr10 | 7042001 | 7067000 | 24999 | 3 |
| Deletion | Chr11 | 7621088 | 7621106 | 18 | |
| Deletion | Chr3 | 8403564 | 8403566 | 2 | |
| Deletion | Chr2 | 9124293 | 9124294 | 1 | |
| Deletion | Chr8 | 10471647 | 10471649 | 2 | |
| Deletion | Chr7 | 11662780 | 11662789 | 9 | |
| Deletion | Chr2 | 14326569 | 14326571 | 2 | |
| Deletion | Chr3 | 15809001 | 15819000 | 9999 | OsKitaake03g202400 |
| Deletion | Chr12 | 17329987 | 17329988 | 1 | OsKitaake12g127400 |
| Deletion | Chr12 | 19537683 | 19537684 | 1 | |
| Deletion | Chr3 | 20668249 | 20668251 | 2 | |
| Deletion | Chr3 | 25795461 | 25795464 | 3 | |
| Deletion | Chr5 | 27044396 | 27044398 | 2 | |
| Deletion | Chr1 | 27960414 | 27960514 | 100 | |
| Deletion | Chr3 | 34573969 | 34573974 | 5 | |
| Deletion | Chr1 | 35226848 | 35226856 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 18113973 | 18113976 | 2 | |
| Insertion | Chr2 | 21783872 | 21783875 | 2 | |
| Insertion | Chr7 | 22884056 | 22884058 | 1 | OsKitaake07g197000  |