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| Mutant Information |
|---|
| Mutant Name | FN989-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN989-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10761794 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 15943032 | A-T | Hetero | INTRON | |
| SBS | Chr1 | 22280874 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 33778648 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 37178416 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 39729325 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 2679608 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g038600 |
| SBS | Chr2 | 4850998 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 20522902 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30472126 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 37588777 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake03g422100 |
| SBS | Chr5 | 12300266 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 13994320 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 25692848 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 26219349 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9619353 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 1389359 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 2289244 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3647189 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13051752 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 3091202 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7666305 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13225230 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3552978 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18309683 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15474105 | G-A | Hetero | INTRON | |
| SBS | Chr11 | 2039643 | A-T | Homo | INTRON | |
| SBS | Chr11 | 2747598 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 10056018 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 11227675 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 14827751 | G-A | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2405685 | 2405694 | 9 | |
| Deletion | Chr3 | 2910743 | 2910749 | 6 | |
| Deletion | Chr8 | 2933555 | 2933564 | 9 | OsKitaake08g032300 |
| Deletion | Chr4 | 3487686 | 3487687 | 1 | |
| Deletion | Chr10 | 8071222 | 8071227 | 5 | |
| Deletion | Chr11 | 10160605 | 10160606 | 1 | |
| Deletion | Chr5 | 14074135 | 14074136 | 1 | |
| Deletion | Chr5 | 14153871 | 14153872 | 1 | |
| Deletion | Chr5 | 15920684 | 15920701 | 17 | |
| Deletion | Chr10 | 19421740 | 19421746 | 6 | |
| Deletion | Chr4 | 19772107 | 19772112 | 5 | |
| Deletion | Chr11 | 20317646 | 20317651 | 5 | |
| Deletion | Chr5 | 23361001 | 23447000 | 85999 | 15 |
| Deletion | Chr5 | 23457001 | 23478000 | 20999 | 4 |
| Deletion | Chr5 | 24781502 | 24781504 | 2 | |
| Deletion | Chr4 | 28509973 | 28509974 | 1 | |
| Deletion | Chr5 | 29416444 | 29416460 | 16 | |
| Deletion | Chr2 | 33501501 | 33501513 | 12 | |
| Deletion | Chr3 | 37218851 | 37218864 | 13 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 1196131 | 1196139 | 7 | |
| Insertion | Chr6 | 5682607 | 5682611 | 3 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 9917803 | Chr5 | 23638946 | OsKitaake05g206700 |
| Translocation | Chr11 | 9917809 | Chr5 | 23638775 | OsKitaake05g206700 |
| Translocation | Chr5 | 23638950 | Chr1 | 41468064 | OsKitaake05g206700 |
| Translocation | Chr5 | 23642664 | Chr1 | 41468134 |