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Mutant Information

Mutant Name	FN990-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN990-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8430360 G-T Homo SYNONYMOUS_CODING
SBS Chr1 22742651 A-G Hetero INTERGENIC
SBS Chr1 32190784 C-T Hetero INTERGENIC
SBS Chr2 3397197 C-G Hetero INTERGENIC
SBS Chr2 4094692 C-T Homo INTRON
SBS Chr2 8856089 T-A Hetero INTERGENIC
SBS Chr2 12136980 G-A Hetero INTERGENIC
SBS Chr2 29788954 T-A Hetero INTERGENIC
SBS Chr3 3129011 T-A Hetero INTERGENIC
SBS Chr3 19855874 G-A Hetero INTERGENIC
SBS Chr3 23630985 A-C Homo INTRON
SBS Chr3 23765744 C-T Homo INTERGENIC
SBS Chr3 29185600 C-T Homo INTRON
SBS Chr4 17908212 C-T Hetero INTERGENIC
SBS Chr4 21660317 G-A Hetero INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr6 8702448 C-T Hetero INTERGENIC
SBS Chr6 12818141 G-A Hetero INTERGENIC
SBS Chr6 17433297 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g162103
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr7 14640694 A-T Hetero INTERGENIC
SBS Chr7 14641017 T-A Hetero INTERGENIC
SBS Chr7 15372605 T-C Hetero INTERGENIC
SBS Chr7 21471339 A-T Homo INTERGENIC
SBS Chr7 21471347 C-G Homo INTERGENIC
SBS Chr8 1505813 T-A Homo INTRON
SBS Chr8 3274759 A-G Hetero UTR_3_PRIME
SBS Chr8 11274185 C-T Hetero INTERGENIC
SBS Chr9 1586750 C-T Homo INTERGENIC
SBS Chr11 8621234 C-T Hetero INTERGENIC
SBS Chr11 17878814 T-A Hetero INTERGENIC
SBS Chr11 17912719 T-C Hetero INTERGENIC
SBS Chr12 130830 G-A Hetero UTR_3_PRIME
SBS Chr12 17164088 T-C Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 6235140 6235141 1
Deletion Chr8 8243604 8243606 2
Deletion Chr1 8427368 8427392 24
Deletion Chr10 13960411 13960415 4
Deletion Chr12 14712895 14712896 1
Deletion Chr7 15775831 15775832 1
Deletion Chr7 15785001 16179000 393999 29
Deletion Chr8 17566696 17566700 4
Deletion Chr3 19925146 19925147 1
Deletion Chr7 21470584 21470596 12
Deletion Chr6 22953806 22953807 1
Deletion Chr7 23295997 23296000 3
Deletion Chr10 24015601 24015603 2
Deletion Chr11 26234102 26234106 4 OsKitaake11g211800
Deletion Chr6 30597659 30597666 7

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10612490 10612495 4
Insertion Chr1 20851777 20851785 7
Insertion Chr1 30334508 30334511 2
Insertion Chr2 9565017 9565020 2
Insertion Chr3 16334744 16334747 2
Insertion Chr5 29722993 29722996 2
Insertion Chr11 16338087 16338090 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 26498861 26503074 OsKitaake07g244800
Inversion Chr7 26498874 26503078 OsKitaake07g244800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8430360	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	22742651	A-G	Hetero	INTERGENIC
SBS	Chr1	32190784	C-T	Hetero	INTERGENIC
SBS	Chr2	3397197	C-G	Hetero	INTERGENIC
SBS	Chr2	4094692	C-T	Homo	INTRON
SBS	Chr2	8856089	T-A	Hetero	INTERGENIC
SBS	Chr2	12136980	G-A	Hetero	INTERGENIC
SBS	Chr2	29788954	T-A	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Hetero	INTERGENIC
SBS	Chr3	19855874	G-A	Hetero	INTERGENIC
SBS	Chr3	23630985	A-C	Homo	INTRON
SBS	Chr3	23765744	C-T	Homo	INTERGENIC
SBS	Chr3	29185600	C-T	Homo	INTRON
SBS	Chr4	17908212	C-T	Hetero	INTERGENIC
SBS	Chr4	21660317	G-A	Hetero	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr6	8702448	C-T	Hetero	INTERGENIC
SBS	Chr6	12818141	G-A	Hetero	INTERGENIC
SBS	Chr6	17433297	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g162103
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr7	14640694	A-T	Hetero	INTERGENIC
SBS	Chr7	14641017	T-A	Hetero	INTERGENIC
SBS	Chr7	15372605	T-C	Hetero	INTERGENIC
SBS	Chr7	21471339	A-T	Homo	INTERGENIC
SBS	Chr7	21471347	C-G	Homo	INTERGENIC
SBS	Chr8	1505813	T-A	Homo	INTRON
SBS	Chr8	3274759	A-G	Hetero	UTR_3_PRIME
SBS	Chr8	11274185	C-T	Hetero	INTERGENIC
SBS	Chr9	1586750	C-T	Homo	INTERGENIC
SBS	Chr11	8621234	C-T	Hetero	INTERGENIC
SBS	Chr11	17878814	T-A	Hetero	INTERGENIC
SBS	Chr11	17912719	T-C	Hetero	INTERGENIC
SBS	Chr12	130830	G-A	Hetero	UTR_3_PRIME
SBS	Chr12	17164088	T-C	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	6235140	6235141	1
Deletion	Chr8	8243604	8243606	2
Deletion	Chr1	8427368	8427392	24
Deletion	Chr10	13960411	13960415	4
Deletion	Chr12	14712895	14712896	1
Deletion	Chr7	15775831	15775832	1
Deletion	Chr7	15785001	16179000	393999	29
Deletion	Chr8	17566696	17566700	4
Deletion	Chr3	19925146	19925147	1
Deletion	Chr7	21470584	21470596	12
Deletion	Chr6	22953806	22953807	1
Deletion	Chr7	23295997	23296000	3
Deletion	Chr10	24015601	24015603	2
Deletion	Chr11	26234102	26234106	4	OsKitaake11g211800
Deletion	Chr6	30597659	30597666	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26498861	26503074	OsKitaake07g244800
Inversion	Chr7	26498874	26503078	OsKitaake07g244800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes