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Mutant Information

Mutant Name	FN992-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN992-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 14

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3407357 A-T Homo INTRON
SBS Chr3 7760208 C-A Hetero INTRON
SBS Chr3 10451878 T-C Hetero INTRON
SBS Chr3 28284014 C-T Homo INTRON
SBS Chr3 28284021 C-T Homo INTRON
SBS Chr4 5144535 A-G Hetero INTERGENIC
SBS Chr5 9633561 C-T Hetero INTERGENIC
SBS Chr6 7485828 A-G Hetero INTRON
SBS Chr6 10024594 G-A Hetero INTERGENIC
SBS Chr6 29588033 G-A Hetero INTERGENIC
SBS Chr6 29588034 G-C Hetero INTERGENIC
SBS Chr7 5970745 G-A Homo INTERGENIC
SBS Chr7 14402646 G-A Hetero INTERGENIC
SBS Chr10 7625151 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 786182 786217 35
Deletion Chr10 1727698 1727704 6
Deletion Chr7 3989419 3989429 10
Deletion Chr10 7683810 7683811 1
Deletion Chr6 9669989 9669990 1
Deletion Chr6 9731007 9731009 2
Deletion Chr11 15735001 15917000 181999 9
Deletion Chr9 16180339 16180344 5
Deletion Chr4 19550548 19550549 1
Deletion Chr6 19834360 19834361 1
Deletion Chr3 20337876 20337877 1
Deletion Chr4 21459285 21459286 1
Deletion Chr11 28150221 28150222 1
Deletion Chr11 28896924 28896991 67
Deletion Chr5 29878110 29878111 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 5119765 5119768 2
Insertion Chr6 7090655 7090658 2
Insertion Chr8 11244922 11244926 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 23024412 23744784 OsKitaake08g183200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3407357	A-T	Homo	INTRON
SBS	Chr3	7760208	C-A	Hetero	INTRON
SBS	Chr3	10451878	T-C	Hetero	INTRON
SBS	Chr3	28284014	C-T	Homo	INTRON
SBS	Chr3	28284021	C-T	Homo	INTRON
SBS	Chr4	5144535	A-G	Hetero	INTERGENIC
SBS	Chr5	9633561	C-T	Hetero	INTERGENIC
SBS	Chr6	7485828	A-G	Hetero	INTRON
SBS	Chr6	10024594	G-A	Hetero	INTERGENIC
SBS	Chr6	29588033	G-A	Hetero	INTERGENIC
SBS	Chr6	29588034	G-C	Hetero	INTERGENIC
SBS	Chr7	5970745	G-A	Homo	INTERGENIC
SBS	Chr7	14402646	G-A	Hetero	INTERGENIC
SBS	Chr10	7625151	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	786182	786217	35
Deletion	Chr10	1727698	1727704	6
Deletion	Chr7	3989419	3989429	10
Deletion	Chr10	7683810	7683811	1
Deletion	Chr6	9669989	9669990	1
Deletion	Chr6	9731007	9731009	2
Deletion	Chr11	15735001	15917000	181999	9
Deletion	Chr9	16180339	16180344	5
Deletion	Chr4	19550548	19550549	1
Deletion	Chr6	19834360	19834361	1
Deletion	Chr3	20337876	20337877	1
Deletion	Chr4	21459285	21459286	1
Deletion	Chr11	28150221	28150222	1
Deletion	Chr11	28896924	28896991	67
Deletion	Chr5	29878110	29878111	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	23024412	23744784	OsKitaake08g183200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes