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Mutant Information

Mutant Name	FN993-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN993-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 796670 G-A Hetero INTERGENIC
SBS Chr1 7036561 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 14520224 T-G Homo INTERGENIC
SBS Chr2 10532131 C-T Hetero UTR_3_PRIME
SBS Chr2 10532133 C-T Hetero UTR_3_PRIME
SBS Chr2 10532136 G-T Hetero UTR_3_PRIME
SBS Chr2 19402475 A-T Hetero INTERGENIC
SBS Chr2 20606349 G-A Hetero INTERGENIC
SBS Chr3 31752676 A-T Hetero INTERGENIC
SBS Chr4 35768938 G-A Hetero INTERGENIC
SBS Chr4 36465022 C-T Hetero INTERGENIC
SBS Chr5 43357 C-A Hetero UTR_3_PRIME
SBS Chr5 43360 G-A Hetero UTR_3_PRIME
SBS Chr5 9855134 C-T Hetero INTERGENIC
SBS Chr5 10293374 C-T Hetero INTERGENIC
SBS Chr5 12018660 G-A Hetero INTERGENIC
SBS Chr6 6526016 T-A Hetero INTERGENIC
SBS Chr7 17418774 G-A Hetero INTERGENIC
SBS Chr7 17418775 T-G Hetero INTERGENIC
SBS Chr7 26774592 C-A Hetero UTR_5_PRIME
SBS Chr8 12734531 T-C Hetero INTERGENIC
SBS Chr8 19644248 C-T Hetero UTR_3_PRIME
SBS Chr8 24370240 G-A Hetero INTRON
SBS Chr9 4589878 A-T Homo INTERGENIC
SBS Chr9 9353597 G-T Hetero INTERGENIC
SBS Chr10 8095036 G-A Hetero INTERGENIC
SBS Chr10 23154484 G-A Hetero STOP_GAINED OsKitaake10g195250
SBS Chr11 10292909 A-C Hetero INTERGENIC
SBS Chr11 25833857 G-A Hetero INTERGENIC
SBS Chr12 13480529 G-A Hetero INTERGENIC
SBS Chr12 14278730 T-G Hetero INTERGENIC
SBS Chr12 16182015 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 614540 614541 1 OsKitaake01g114100
Deletion Chr7 2736307 2736308 1
Deletion Chr6 5835555 5835557 2
Deletion Chr1 6364169 6364170 1
Deletion Chr11 7272001 7324000 51999 7
Deletion Chr10 8178500 8178504 4
Deletion Chr2 10507001 10541000 33999 3
Deletion Chr6 12807001 12837000 29999 3
Deletion Chr2 13291981 13291984 3
Deletion Chr2 16969755 16969773 18
Deletion Chr6 17834455 17834466 11
Deletion Chr3 19656850 19656851 1
Deletion Chr3 20035146 20035300 154
Deletion Chr2 27900887 27900888 1
Deletion Chr3 30650781 30650782 1
Deletion Chr3 35434919 35434932 13

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 1205927 Chr2 10508833 OsKitaake02g124600
Translocation Chr5 1317611 Chr2 10539963 OsKitaake05g016500
Translocation Chr7 20950560 Chr3 7195781 OsKitaake07g173000
Translocation Chr7 20951911 Chr3 7195779 OsKitaake07g173000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	796670	G-A	Hetero	INTERGENIC
SBS	Chr1	7036561	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	14520224	T-G	Homo	INTERGENIC
SBS	Chr2	10532131	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	10532133	C-T	Hetero	UTR_3_PRIME
SBS	Chr2	10532136	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	19402475	A-T	Hetero	INTERGENIC
SBS	Chr2	20606349	G-A	Hetero	INTERGENIC
SBS	Chr3	31752676	A-T	Hetero	INTERGENIC
SBS	Chr4	35768938	G-A	Hetero	INTERGENIC
SBS	Chr4	36465022	C-T	Hetero	INTERGENIC
SBS	Chr5	43357	C-A	Hetero	UTR_3_PRIME
SBS	Chr5	43360	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	9855134	C-T	Hetero	INTERGENIC
SBS	Chr5	10293374	C-T	Hetero	INTERGENIC
SBS	Chr5	12018660	G-A	Hetero	INTERGENIC
SBS	Chr6	6526016	T-A	Hetero	INTERGENIC
SBS	Chr7	17418774	G-A	Hetero	INTERGENIC
SBS	Chr7	17418775	T-G	Hetero	INTERGENIC
SBS	Chr7	26774592	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	12734531	T-C	Hetero	INTERGENIC
SBS	Chr8	19644248	C-T	Hetero	UTR_3_PRIME
SBS	Chr8	24370240	G-A	Hetero	INTRON
SBS	Chr9	4589878	A-T	Homo	INTERGENIC
SBS	Chr9	9353597	G-T	Hetero	INTERGENIC
SBS	Chr10	8095036	G-A	Hetero	INTERGENIC
SBS	Chr10	23154484	G-A	Hetero	STOP_GAINED	OsKitaake10g195250
SBS	Chr11	10292909	A-C	Hetero	INTERGENIC
SBS	Chr11	25833857	G-A	Hetero	INTERGENIC
SBS	Chr12	13480529	G-A	Hetero	INTERGENIC
SBS	Chr12	14278730	T-G	Hetero	INTERGENIC
SBS	Chr12	16182015	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	614540	614541	1	OsKitaake01g114100
Deletion	Chr7	2736307	2736308	1
Deletion	Chr6	5835555	5835557	2
Deletion	Chr1	6364169	6364170	1
Deletion	Chr11	7272001	7324000	51999	7
Deletion	Chr10	8178500	8178504	4
Deletion	Chr2	10507001	10541000	33999	3
Deletion	Chr6	12807001	12837000	29999	3
Deletion	Chr2	13291981	13291984	3
Deletion	Chr2	16969755	16969773	18
Deletion	Chr6	17834455	17834466	11
Deletion	Chr3	19656850	19656851	1
Deletion	Chr3	20035146	20035300	154
Deletion	Chr2	27900887	27900888	1
Deletion	Chr3	30650781	30650782	1
Deletion	Chr3	35434919	35434932	13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	1205927	Chr2	10508833	OsKitaake02g124600
Translocation	Chr5	1317611	Chr2	10539963	OsKitaake05g016500
Translocation	Chr7	20950560	Chr3	7195781	OsKitaake07g173000
Translocation	Chr7	20951911	Chr3	7195779	OsKitaake07g173000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes