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Mutant Information

Mutant Name	FN994-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN994-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10868302 C-T Homo INTERGENIC
SBS Chr1 36574047 C-T Hetero INTRON
SBS Chr1 42004266 A-T Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 14914450 A-C Homo INTERGENIC
SBS Chr2 24291429 C-T Hetero INTERGENIC
SBS Chr2 34116825 G-T Homo INTRON
SBS Chr3 4987030 A-G Homo INTERGENIC
SBS Chr3 24165778 A-T Hetero INTERGENIC
SBS Chr3 26705210 T-A Homo INTERGENIC
SBS Chr4 34456267 C-T Hetero INTERGENIC
SBS Chr5 6181245 G-A Hetero INTERGENIC
SBS Chr5 18504051 T-A Hetero INTERGENIC
SBS Chr6 23778787 C-T Homo SYNONYMOUS_CODING
SBS Chr7 4617130 G-A Hetero INTERGENIC
SBS Chr7 28154045 G-A Hetero INTERGENIC
SBS Chr8 5425231 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g058900
SBS Chr8 7738229 T-C Hetero INTERGENIC
SBS Chr9 8479517 G-A Homo INTERGENIC
SBS Chr9 22411158 G-A Homo INTERGENIC
SBS Chr10 1963501 G-A Hetero INTERGENIC
SBS Chr11 3443928 G-A Hetero UTR_3_PRIME
SBS Chr11 5025141 T-A Hetero INTERGENIC
SBS Chr12 18109272 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 89043 89396 353
Deletion Chr11 509695 509697 2
Deletion Chr3 7566407 7566409 2
Deletion Chr3 10643910 10643913 3
Deletion Chr1 12202661 12202662 1
Deletion Chr7 13726001 13730000 3999
Deletion Chr8 13915933 13915934 1
Deletion Chr2 14820500 14820509 9
Deletion Chr9 15047813 15047817 4
Deletion Chr5 18688673 18688683 10
Deletion Chr6 21135993 21135995 2
Deletion Chr3 23524001 23561000 36999 2
Deletion Chr11 24441271 24441277 6
Deletion Chr4 29071874 29071876 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 22781961 22781964 2
Insertion Chr7 18398048 18398052 3
Insertion Chr7 24265846 24265849 2
Insertion Chr5 12633210 12633212 1
Insertion Chr5 30225097 30225105 7
Insertion Chr8 1411838 1411840 1
Insertion Chr12 16857059 16857061 1

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 3263171 Chr4 18662246
Translocation Chr9 3263341 Chr4 18662767
Translocation Chr4 18664666 Chr2 31475087
Translocation Chr4 19739724 Chr2 31475093
Translocation Chr8 27995007 Chr3 34427143
Translocation Chr8 27995015 Chr3 34422869

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10868302	C-T	Homo	INTERGENIC
SBS	Chr1	36574047	C-T	Hetero	INTRON
SBS	Chr1	42004266	A-T	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	14914450	A-C	Homo	INTERGENIC
SBS	Chr2	24291429	C-T	Hetero	INTERGENIC
SBS	Chr2	34116825	G-T	Homo	INTRON
SBS	Chr3	4987030	A-G	Homo	INTERGENIC
SBS	Chr3	24165778	A-T	Hetero	INTERGENIC
SBS	Chr3	26705210	T-A	Homo	INTERGENIC
SBS	Chr4	34456267	C-T	Hetero	INTERGENIC
SBS	Chr5	6181245	G-A	Hetero	INTERGENIC
SBS	Chr5	18504051	T-A	Hetero	INTERGENIC
SBS	Chr6	23778787	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	4617130	G-A	Hetero	INTERGENIC
SBS	Chr7	28154045	G-A	Hetero	INTERGENIC
SBS	Chr8	5425231	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g058900
SBS	Chr8	7738229	T-C	Hetero	INTERGENIC
SBS	Chr9	8479517	G-A	Homo	INTERGENIC
SBS	Chr9	22411158	G-A	Homo	INTERGENIC
SBS	Chr10	1963501	G-A	Hetero	INTERGENIC
SBS	Chr11	3443928	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	5025141	T-A	Hetero	INTERGENIC
SBS	Chr12	18109272	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	89043	89396	353
Deletion	Chr11	509695	509697	2
Deletion	Chr3	7566407	7566409	2
Deletion	Chr3	10643910	10643913	3
Deletion	Chr1	12202661	12202662	1
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr8	13915933	13915934	1
Deletion	Chr2	14820500	14820509	9
Deletion	Chr9	15047813	15047817	4
Deletion	Chr5	18688673	18688683	10
Deletion	Chr6	21135993	21135995	2
Deletion	Chr3	23524001	23561000	36999	2
Deletion	Chr11	24441271	24441277	6
Deletion	Chr4	29071874	29071876	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3263171	Chr4	18662246
Translocation	Chr9	3263341	Chr4	18662767
Translocation	Chr4	18664666	Chr2	31475087
Translocation	Chr4	19739724	Chr2	31475093
Translocation	Chr8	27995007	Chr3	34427143
Translocation	Chr8	27995015	Chr3	34422869

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes