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| Mutant Information |
|---|
| Mutant Name | FN995-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN995-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14158461 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 22068577 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 22068578 | T-A | Hetero | INTRON | |
| SBS | Chr1 | 35373738 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 38468898 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 19996727 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29132608 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 2746422 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4721841 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4721842 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 16555272 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19952055 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 29360358 | G-A | Homo | INTRON | |
| SBS | Chr3 | 37700030 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6139604 | T-A | Hetero | INTRON | |
| SBS | Chr4 | 18844866 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 25400638 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9946083 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 22889469 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 13409573 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 13409574 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 10823995 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5538427 | T-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g060600 |
| SBS | Chr8 | 21933064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15513434 | C-A | Homo | INTERGENIC | |
| SBS | Chr9 | 17111901 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17849893 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20055399 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g151600 |
| SBS | Chr10 | 20123508 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 296910 | C-A | Homo | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 2949793 | 2949796 | 3 | |
| Deletion | Chr11 | 6167510 | 6167511 | 1 | |
| Deletion | Chr7 | 7867373 | 7867374 | 1 | |
| Deletion | Chr8 | 10792001 | 10840000 | 47999 | OsKitaake08g097400 |
| Deletion | Chr3 | 10969920 | 10969921 | 1 | |
| Deletion | Chr6 | 13277302 | 13277310 | 8 | |
| Deletion | Chr3 | 13394001 | 13423000 | 28999 | 5 |
| Deletion | Chr8 | 13904397 | 13904398 | 1 | |
| Deletion | Chr11 | 15495322 | 15495323 | 1 | |
| Deletion | Chr7 | 17021158 | 17021164 | 6 | |
| Deletion | Chr2 | 20550466 | 20550788 | 322 | |
| Deletion | Chr8 | 23282012 | 23282013 | 1 | |
| Deletion | Chr7 | 23587413 | 23587425 | 12 | |
| Deletion | Chr1 | 25412426 | 25412430 | 4 | |
| Deletion | Chr6 | 27633099 | 27633105 | 6 | |
| Deletion | Chr3 | 30174911 | 30174912 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr9 | 15299681 | 15299683 | 1 | OsKitaake09g107400  |
| Insertion | Chr4 | 31965684 | 31965686 | 1 | |
| Insertion | Chr5 | 9944344 | 9944346 | 1 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 1284210 | Chr2 | 30451633 | OsKitaake02g310400 |
| Translocation | Chr9 | 1290284 | Chr2 | 30448220 | |
| Translocation | Chr7 | 19819420 | Chr2 | 31761639 | OsKitaake07g161800 |
| Translocation | Chr7 | 19819426 | Chr2 | 31760580 | OsKitaake07g161800 |