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Mutant Information

Mutant Name	FN996-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN996-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27904651 C-T Homo INTERGENIC
SBS Chr2 2416043 G-T Hetero INTRON
SBS Chr2 8356560 C-T Hetero INTERGENIC
SBS Chr2 14255155 G-T Hetero INTERGENIC
SBS Chr2 34055896 A-G Homo INTERGENIC
SBS Chr3 27313690 G-A Hetero INTERGENIC
SBS Chr3 27498268 G-A Hetero INTERGENIC
SBS Chr3 30540542 G-C Hetero INTERGENIC
SBS Chr3 31682714 A-T Hetero INTRON
SBS Chr4 15654272 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g075200
SBS Chr4 19443190 C-A Hetero INTERGENIC
SBS Chr5 12807227 C-T Homo INTERGENIC
SBS Chr5 14109027 T-G Hetero INTERGENIC
SBS Chr6 1953238 C-A Hetero INTRON
SBS Chr7 2960879 G-A Homo INTERGENIC
SBS Chr7 7174534 T-C Homo INTERGENIC
SBS Chr7 10473034 T-C Homo INTERGENIC
SBS Chr7 10840154 A-G Homo INTERGENIC
SBS Chr7 22046361 A-T Homo INTERGENIC
SBS Chr7 26909676 C-A Hetero INTERGENIC
SBS Chr7 27523575 A-G Hetero SYNONYMOUS_CODING
SBS Chr8 9783834 A-G Hetero INTERGENIC
SBS Chr8 18930358 C-T Hetero INTRON
SBS Chr9 4185272 C-T Hetero UTR_5_PRIME
SBS Chr9 11128375 T-C Hetero INTERGENIC
SBS Chr9 12612187 G-A Hetero INTERGENIC
SBS Chr10 13035510 C-A Hetero INTRON
SBS Chr10 13202838 C-A Hetero INTERGENIC
SBS Chr11 1005815 C-T Homo INTERGENIC
SBS Chr11 5043415 A-T Hetero INTERGENIC
SBS Chr11 27342999 C-T Hetero INTERGENIC
SBS Chr12 1977778 T-C Homo NON_SYNONYMOUS_CODING OsKitaake12g030800

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 324647 324648 1
Deletion Chr1 3898798 3898802 4 OsKitaake01g052200
Deletion Chr9 5227041 5227054 13
Deletion Chr6 6444097 6444101 4
Deletion Chr3 6800875 6800884 9 OsKitaake03g096500
Deletion Chr4 8243001 8380000 136999 4
Deletion Chr6 11286346 11286351 5 OsKitaake06g124900
Deletion Chr11 11858347 11858351 4
Deletion Chr10 12250585 12250587 2
Deletion Chr4 12263199 12263230 31
Deletion Chr7 12510747 12510750 3
Deletion Chr6 12692999 12693000 1
Deletion Chr12 13242085 13242088 3
Deletion Chr5 14882351 14882355 4
Deletion Chr6 16122508 16122514 6
Deletion Chr1 18014635 18014720 85
Deletion Chr6 19041373 19041378 5
Deletion Chr4 19652621 19652622 1
Deletion Chr5 25569388 25569392 4
Deletion Chr3 34347813 34347814 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 6746813 6746817 3
Insertion Chr1 39814436 39814438 1
Insertion Chr5 30012537 30012539 1
Insertion Chr10 8267973 8267982 8

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7464046 8242753 OsKitaake04g043000
Inversion Chr11 13268110 14071357

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27904651	C-T	Homo	INTERGENIC
SBS	Chr2	2416043	G-T	Hetero	INTRON
SBS	Chr2	8356560	C-T	Hetero	INTERGENIC
SBS	Chr2	14255155	G-T	Hetero	INTERGENIC
SBS	Chr2	34055896	A-G	Homo	INTERGENIC
SBS	Chr3	27313690	G-A	Hetero	INTERGENIC
SBS	Chr3	27498268	G-A	Hetero	INTERGENIC
SBS	Chr3	30540542	G-C	Hetero	INTERGENIC
SBS	Chr3	31682714	A-T	Hetero	INTRON
SBS	Chr4	15654272	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g075200
SBS	Chr4	19443190	C-A	Hetero	INTERGENIC
SBS	Chr5	12807227	C-T	Homo	INTERGENIC
SBS	Chr5	14109027	T-G	Hetero	INTERGENIC
SBS	Chr6	1953238	C-A	Hetero	INTRON
SBS	Chr7	2960879	G-A	Homo	INTERGENIC
SBS	Chr7	7174534	T-C	Homo	INTERGENIC
SBS	Chr7	10473034	T-C	Homo	INTERGENIC
SBS	Chr7	10840154	A-G	Homo	INTERGENIC
SBS	Chr7	22046361	A-T	Homo	INTERGENIC
SBS	Chr7	26909676	C-A	Hetero	INTERGENIC
SBS	Chr7	27523575	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr8	9783834	A-G	Hetero	INTERGENIC
SBS	Chr8	18930358	C-T	Hetero	INTRON
SBS	Chr9	4185272	C-T	Hetero	UTR_5_PRIME
SBS	Chr9	11128375	T-C	Hetero	INTERGENIC
SBS	Chr9	12612187	G-A	Hetero	INTERGENIC
SBS	Chr10	13035510	C-A	Hetero	INTRON
SBS	Chr10	13202838	C-A	Hetero	INTERGENIC
SBS	Chr11	1005815	C-T	Homo	INTERGENIC
SBS	Chr11	5043415	A-T	Hetero	INTERGENIC
SBS	Chr11	27342999	C-T	Hetero	INTERGENIC
SBS	Chr12	1977778	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g030800

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	324647	324648	1
Deletion	Chr1	3898798	3898802	4	OsKitaake01g052200
Deletion	Chr9	5227041	5227054	13
Deletion	Chr6	6444097	6444101	4
Deletion	Chr3	6800875	6800884	9	OsKitaake03g096500
Deletion	Chr4	8243001	8380000	136999	4
Deletion	Chr6	11286346	11286351	5	OsKitaake06g124900
Deletion	Chr11	11858347	11858351	4
Deletion	Chr10	12250585	12250587	2
Deletion	Chr4	12263199	12263230	31
Deletion	Chr7	12510747	12510750	3
Deletion	Chr6	12692999	12693000	1
Deletion	Chr12	13242085	13242088	3
Deletion	Chr5	14882351	14882355	4
Deletion	Chr6	16122508	16122514	6
Deletion	Chr1	18014635	18014720	85
Deletion	Chr6	19041373	19041378	5
Deletion	Chr4	19652621	19652622	1
Deletion	Chr5	25569388	25569392	4
Deletion	Chr3	34347813	34347814	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7464046	8242753	OsKitaake04g043000
Inversion	Chr11	13268110	14071357

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes