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Mutant Information

Mutant Name	FN997-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN997-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11297551 T-A Hetero UTR_3_PRIME
SBS Chr1 24246195 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g233600
SBS Chr1 24246196 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g233600
SBS Chr1 26401856 G-A Hetero INTERGENIC
SBS Chr1 29972787 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 36978167 T-C Hetero INTERGENIC
SBS Chr2 13696169 G-A Hetero INTERGENIC
SBS Chr2 17042368 A-G Hetero INTERGENIC
SBS Chr2 18893999 G-T Hetero INTERGENIC
SBS Chr2 27577752 A-T Homo INTERGENIC
SBS Chr2 27577753 C-T Homo INTERGENIC
SBS Chr3 24995830 C-G Homo INTERGENIC
SBS Chr4 11455640 C-A Homo INTERGENIC
SBS Chr4 17199611 A-G Homo INTERGENIC
SBS Chr4 24586014 G-T Hetero STOP_GAINED OsKitaake04g161100
SBS Chr4 28086173 G-A Homo INTERGENIC
SBS Chr5 6035934 C-T Homo INTERGENIC
SBS Chr5 14192695 A-T Homo INTRON
SBS Chr5 17899108 G-A Hetero INTERGENIC
SBS Chr5 22552712 C-T Hetero INTERGENIC
SBS Chr6 8790099 G-A Homo INTERGENIC
SBS Chr6 18099615 C-G Hetero INTERGENIC
SBS Chr6 23386118 G-A Hetero INTERGENIC
SBS Chr6 24792546 G-A Hetero INTERGENIC
SBS Chr6 28351810 C-T Homo INTERGENIC
SBS Chr6 28351811 A-C Homo INTERGENIC
SBS Chr7 29184051 G-A Homo INTERGENIC
SBS Chr9 799221 C-A Hetero INTERGENIC
SBS Chr9 4577601 A-G Homo INTERGENIC
SBS Chr9 10252196 A-T Homo INTERGENIC
SBS Chr9 22026403 C-A Homo INTERGENIC
SBS Chr11 4152438 C-A Hetero INTERGENIC
SBS Chr11 20303015 T-A Hetero INTERGENIC
SBS Chr11 20361104 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g159300
SBS Chr11 21806505 G-C Hetero INTERGENIC
SBS Chr11 25303901 T-A Hetero INTERGENIC
SBS Chr11 25303902 G-A Hetero INTERGENIC
SBS Chr11 29387375 G-T Hetero UTR_3_PRIME
SBS Chr12 25647106 C-A Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 7105 7456 351
Deletion Chr9 1024991 1024994 3
Deletion Chr2 4311808 4311809 1
Deletion Chr8 6162487 6162489 2
Deletion Chr11 8182880 8182882 2
Deletion Chr3 8310000 8310029 29 OsKitaake03g114700
Deletion Chr1 17910024 17910029 5
Deletion Chr3 18271376 18271391 15
Deletion Chr10 20550886 20550887 1
Deletion Chr10 23868375 23868376 1
Deletion Chr12 23886790 23886791 1
Deletion Chr12 25366665 25366669 4
Deletion Chr1 25695168 25695172 4
Deletion Chr4 29161929 29161934 5
Deletion Chr4 32564932 32564938 6 OsKitaake04g261300
Deletion Chr4 35775908 35775912 4 OsKitaake04g305800
Deletion Chr1 40831011 40831012 1 OsKitaake01g444300

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr10 1149788 1149790 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 27200487 27295325
Inversion Chr2 27200493 27296086

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 22630914 Chr2 27296048 OsKitaake07g193500
Translocation Chr7 22630922 Chr2 27295342 OsKitaake07g193500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11297551	T-A	Hetero	UTR_3_PRIME
SBS	Chr1	24246195	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g233600
SBS	Chr1	24246196	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g233600
SBS	Chr1	26401856	G-A	Hetero	INTERGENIC
SBS	Chr1	29972787	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36978167	T-C	Hetero	INTERGENIC
SBS	Chr2	13696169	G-A	Hetero	INTERGENIC
SBS	Chr2	17042368	A-G	Hetero	INTERGENIC
SBS	Chr2	18893999	G-T	Hetero	INTERGENIC
SBS	Chr2	27577752	A-T	Homo	INTERGENIC
SBS	Chr2	27577753	C-T	Homo	INTERGENIC
SBS	Chr3	24995830	C-G	Homo	INTERGENIC
SBS	Chr4	11455640	C-A	Homo	INTERGENIC
SBS	Chr4	17199611	A-G	Homo	INTERGENIC
SBS	Chr4	24586014	G-T	Hetero	STOP_GAINED	OsKitaake04g161100
SBS	Chr4	28086173	G-A	Homo	INTERGENIC
SBS	Chr5	6035934	C-T	Homo	INTERGENIC
SBS	Chr5	14192695	A-T	Homo	INTRON
SBS	Chr5	17899108	G-A	Hetero	INTERGENIC
SBS	Chr5	22552712	C-T	Hetero	INTERGENIC
SBS	Chr6	8790099	G-A	Homo	INTERGENIC
SBS	Chr6	18099615	C-G	Hetero	INTERGENIC
SBS	Chr6	23386118	G-A	Hetero	INTERGENIC
SBS	Chr6	24792546	G-A	Hetero	INTERGENIC
SBS	Chr6	28351810	C-T	Homo	INTERGENIC
SBS	Chr6	28351811	A-C	Homo	INTERGENIC
SBS	Chr7	29184051	G-A	Homo	INTERGENIC
SBS	Chr9	799221	C-A	Hetero	INTERGENIC
SBS	Chr9	4577601	A-G	Homo	INTERGENIC
SBS	Chr9	10252196	A-T	Homo	INTERGENIC
SBS	Chr9	22026403	C-A	Homo	INTERGENIC
SBS	Chr11	4152438	C-A	Hetero	INTERGENIC
SBS	Chr11	20303015	T-A	Hetero	INTERGENIC
SBS	Chr11	20361104	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g159300
SBS	Chr11	21806505	G-C	Hetero	INTERGENIC
SBS	Chr11	25303901	T-A	Hetero	INTERGENIC
SBS	Chr11	25303902	G-A	Hetero	INTERGENIC
SBS	Chr11	29387375	G-T	Hetero	UTR_3_PRIME
SBS	Chr12	25647106	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	7105	7456	351
Deletion	Chr9	1024991	1024994	3
Deletion	Chr2	4311808	4311809	1
Deletion	Chr8	6162487	6162489	2
Deletion	Chr11	8182880	8182882	2
Deletion	Chr3	8310000	8310029	29	OsKitaake03g114700
Deletion	Chr1	17910024	17910029	5
Deletion	Chr3	18271376	18271391	15
Deletion	Chr10	20550886	20550887	1
Deletion	Chr10	23868375	23868376	1
Deletion	Chr12	23886790	23886791	1
Deletion	Chr12	25366665	25366669	4
Deletion	Chr1	25695168	25695172	4
Deletion	Chr4	29161929	29161934	5
Deletion	Chr4	32564932	32564938	6	OsKitaake04g261300
Deletion	Chr4	35775908	35775912	4	OsKitaake04g305800
Deletion	Chr1	40831011	40831012	1	OsKitaake01g444300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	27200487	27295325
Inversion	Chr2	27200493	27296086

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes