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Mutant Information

Mutant Name	FN998-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN998-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10607016 T-C Homo INTERGENIC
SBS Chr1 19197478 C-T Hetero INTERGENIC
SBS Chr1 29700679 C-A Hetero INTERGENIC
SBS Chr1 29700680 T-A Hetero INTERGENIC
SBS Chr1 35170438 C-A Hetero INTERGENIC
SBS Chr2 2629056 T-A Homo INTERGENIC
SBS Chr3 36072619 G-A Homo INTERGENIC
SBS Chr4 7349313 G-A Hetero INTERGENIC
SBS Chr4 11180151 G-A Homo INTERGENIC
SBS Chr4 11266945 G-A Homo INTERGENIC
SBS Chr4 13852925 C-T Homo STOP_GAINED OsKitaake04g066400
SBS Chr4 13852926 A-T Homo NON_SYNONYMOUS_CODING OsKitaake04g066400
SBS Chr5 25238025 G-T Hetero INTERGENIC
SBS Chr7 12389308 T-A Homo INTERGENIC
SBS Chr7 22591877 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g193100
SBS Chr7 22591878 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g193100
SBS Chr7 28094396 A-G Hetero INTERGENIC
SBS Chr9 419274 G-A Hetero INTERGENIC
SBS Chr9 13944744 T-C Hetero INTERGENIC
SBS Chr10 5298071 C-G Hetero INTERGENIC
SBS Chr12 13232684 C-T Homo INTERGENIC
SBS Chr12 23536130 C-G Homo INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1119813 1119821 8
Deletion Chr5 2842032 2842033 1
Deletion Chr2 5103112 5103113 1
Deletion Chr1 5502958 5502968 10
Deletion Chr4 10182067 10182081 14
Deletion Chr9 11658727 11658734 7
Deletion Chr7 12389200 12389224 24
Deletion Chr3 18015205 18015206 1
Deletion Chr3 25619773 25619777 4
Deletion Chr8 27470386 27470389 3
Deletion Chr3 28898276 28898299 23
Deletion Chr5 29387455 29387458 3
Deletion Chr5 29809453 29809455 2
Deletion Chr1 38414006 38414007 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 30017678 30017682 3
Insertion Chr7 12005937 12005940 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10607016	T-C	Homo	INTERGENIC
SBS	Chr1	19197478	C-T	Hetero	INTERGENIC
SBS	Chr1	29700679	C-A	Hetero	INTERGENIC
SBS	Chr1	29700680	T-A	Hetero	INTERGENIC
SBS	Chr1	35170438	C-A	Hetero	INTERGENIC
SBS	Chr2	2629056	T-A	Homo	INTERGENIC
SBS	Chr3	36072619	G-A	Homo	INTERGENIC
SBS	Chr4	7349313	G-A	Hetero	INTERGENIC
SBS	Chr4	11180151	G-A	Homo	INTERGENIC
SBS	Chr4	11266945	G-A	Homo	INTERGENIC
SBS	Chr4	13852925	C-T	Homo	STOP_GAINED	OsKitaake04g066400
SBS	Chr4	13852926	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g066400
SBS	Chr5	25238025	G-T	Hetero	INTERGENIC
SBS	Chr7	12389308	T-A	Homo	INTERGENIC
SBS	Chr7	22591877	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g193100
SBS	Chr7	22591878	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g193100
SBS	Chr7	28094396	A-G	Hetero	INTERGENIC
SBS	Chr9	419274	G-A	Hetero	INTERGENIC
SBS	Chr9	13944744	T-C	Hetero	INTERGENIC
SBS	Chr10	5298071	C-G	Hetero	INTERGENIC
SBS	Chr12	13232684	C-T	Homo	INTERGENIC
SBS	Chr12	23536130	C-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1119813	1119821	8
Deletion	Chr5	2842032	2842033	1
Deletion	Chr2	5103112	5103113	1
Deletion	Chr1	5502958	5502968	10
Deletion	Chr4	10182067	10182081	14
Deletion	Chr9	11658727	11658734	7
Deletion	Chr7	12389200	12389224	24
Deletion	Chr3	18015205	18015206	1
Deletion	Chr3	25619773	25619777	4
Deletion	Chr8	27470386	27470389	3
Deletion	Chr3	28898276	28898299	23
Deletion	Chr5	29387455	29387458	3
Deletion	Chr5	29809453	29809455	2
Deletion	Chr1	38414006	38414007	1

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes