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| Mutant Information |
|---|
| Mutant Name | FN999-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN999-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10310883 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g129300 |
| SBS | Chr1 | 27379231 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 6698342 | T-A | Homo | INTRON | |
| SBS | Chr2 | 18443564 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 27911354 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28294572 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4488478 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 11633305 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 17960558 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 20849883 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 27053531 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 27053533 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 28150181 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17703683 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 18143258 | G-T | Homo | INTERGENIC | |
| SBS | Chr6 | 18454018 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22599744 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g199100 |
| SBS | Chr6 | 27516295 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11891057 | T-C | Homo | INTRON | |
| SBS | Chr7 | 11891058 | T-G | Homo | INTRON | |
| SBS | Chr7 | 23394138 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 1856311 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17645470 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 21849499 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21703963 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 6286508 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 28376325 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21653399 | G-A | Hetero | INTERGENIC |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 3508170 | 3508172 | 2 | |
| Deletion | Chr4 | 5672411 | 5672416 | 5 | |
| Deletion | Chr3 | 6280035 | 6280155 | 120 | |
| Deletion | Chr8 | 9628210 | 9628211 | 1 | OsKitaake08g090601 |
| Deletion | Chr5 | 16704944 | 16704945 | 1 | |
| Deletion | Chr5 | 19856307 | 19856314 | 7 | |
| Deletion | Chr4 | 20672043 | 20672066 | 23 | |
| Deletion | Chr12 | 23333392 | 23333397 | 5 | |
| Deletion | Chr4 | 27671001 | 27685000 | 13999 | 2 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 42716128 | 42716131 | 2 | |
| Insertion | Chr5 | 25622972 | 25622975 | 2 | |
| Insertion | Chr12 | 4172945 | 4172947 | 1 | OsKitaake12g057066  |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 28576575 | 29451515 | |
| Inversion | Chr3 | 28576582 | 29451540 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 7896284 | Chr4 | 34809500 | OsKitaake04g291200 |
| Translocation | Chr7 | 7897664 | Chr4 | 34809494 | 2 |
| Translocation | Chr12 | 11835060 | Chr7 | 10842422 |