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Mutant Information

Mutant Name	FN_1017-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_1017-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	643751	C-A	Homo	UTR_3_PRIME
SBS	Chr1	8817754	C-T	Homo	INTERGENIC
SBS	Chr1	12606681	G-A	Hetero	INTERGENIC
SBS	Chr1	20112712	C-T	Hetero	INTERGENIC
SBS	Chr1	25078020	C-A	Hetero	INTRON
SBS	Chr1	25078021	T-C	Hetero	INTRON
SBS	Chr1	25866352	G-A	Hetero	INTERGENIC
SBS	Chr1	33412812	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	34246659	A-T	Homo	INTERGENIC
SBS	Chr2	1462613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g022800
SBS	Chr2	28671147	G-T	Hetero	INTERGENIC
SBS	Chr2	31998514	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g327000
SBS	Chr2	32632221	C-A	Homo	INTRON
SBS	Chr3	1946653	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027800
SBS	Chr3	15048685	G-A	Hetero	INTERGENIC
SBS	Chr3	16028093	C-T	Hetero	INTERGENIC
SBS	Chr3	37590747	C-T	Homo	INTERGENIC
SBS	Chr4	35692569	C-T	Hetero	INTERGENIC
SBS	Chr5	11001459	C-T	Hetero	INTERGENIC
SBS	Chr5	11559399	G-A	Hetero	INTERGENIC
SBS	Chr5	13263367	G-T	Hetero	INTERGENIC
SBS	Chr5	27234656	C-T	Homo	INTERGENIC
SBS	Chr7	699386	G-A	Hetero	INTERGENIC
SBS	Chr7	26791686	T-A	Homo	INTERGENIC
SBS	Chr8	18891731	C-T	Homo	INTERGENIC
SBS	Chr8	28892369	G-A	Homo	UTR_3_PRIME
SBS	Chr9	7427246	A-G	Homo	INTERGENIC
SBS	Chr9	20230001	C-T	Hetero	INTERGENIC
SBS	Chr9	20757886	G-A	Hetero	INTERGENIC
SBS	Chr9	21339264	G-A	Hetero	INTERGENIC
SBS	Chr10	5261154	C-A	Homo	INTERGENIC
SBS	Chr10	6156439	C-T	Homo	INTERGENIC
SBS	Chr10	20963586	G-A	Hetero	INTERGENIC
SBS	Chr11	1603177	T-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	3153975	C-A	Homo	INTERGENIC
SBS	Chr12	8706369	A-T	Hetero	INTRON
SBS	Chr12	14712472	G-T	Homo	INTERGENIC
SBS	Chr12	19017321	T-C	Hetero	INTRON
SBS	Chr12	20888261	G-A	Hetero	INTERGENIC
SBS	Chr12	22533433	G-A	Homo	INTERGENIC
SBS	Chr12	22533436	G-T	Homo	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1191613	1191622	9
Deletion	Chr2	1928970	1928973	3
Deletion	Chr1	2413397	2413399	2
Deletion	Chr11	2494402	2494408	6
Deletion	Chr11	7025001	7134000	108999	10
Deletion	Chr8	8018665	8018670	5
Deletion	Chr8	8246001	8313000	66999	OsKitaake08g076000
Deletion	Chr1	11743001	11766000	22999
Deletion	Chr9	12121817	12121818	1
Deletion	Chr1	12525001	12604000	78999	5
Deletion	Chr7	12701640	12701646	6
Deletion	Chr11	15421944	15421948	4
Deletion	Chr9	15656901	15656902	1
Deletion	Chr6	17900748	17900756	8
Deletion	Chr5	22601555	22601556	1
Deletion	Chr5	24813061	24813067	6
Deletion	Chr1	24833877	24833878	1
Deletion	Chr2	26957473	26957482	9
Deletion	Chr4	27822258	27822270	12
Deletion	Chr4	30961148	30961149	1
Deletion	Chr1	35904001	35936000	31999	3
Deletion	Chr4	36301943	36301944	1
Deletion	Chr1	42636487	42636488	1	OsKitaake01g469800

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	13135367	13135372	4
Insertion	Chr3	12851051	12851054	2
Insertion	Chr6	30090427	30090432	4

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	12341205	13207940
Inversion	Chr1	15829233	16411119	OsKitaake01g172600
Inversion	Chr1	15829237	16299014	OsKitaake01g172600
Inversion	Chr10	21337194	21986053	OsKitaake10g168200
Inversion	Chr10	21337199	21986058	OsKitaake10g168200
Inversion	Chr1	42216520	42869417	2
Inversion	Chr1	42216528	42869418	2

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	3099159	Chr1	11532552	OsKitaake06g042800
Translocation	Chr6	3100407	Chr1	11532550	OsKitaake06g042800
Translocation	Chr11	7031615	Chr4	6492654	2
Translocation	Chr3	22551432	Chr1	36472658	OsKitaake01g387600
Translocation	Chr3	22551437	Chr1	36354329	OsKitaake01g386000
Translocation	Chr10	23682943	Chr5	12341208
Translocation	Chr3	30038529	Chr1	36361236
Translocation	Chr3	30038651	Chr1	36359353	OsKitaake01g386100

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