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| Mutant Information |
|---|
| Mutant Name | FN_543-2-6 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_543-2-6 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 43
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3813301 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16577597 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 16577598 | T-C | Homo | INTERGENIC | |
| SBS | Chr1 | 20765415 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 25726258 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 40055353 | G-T | Hetero | UTR_5_PRIME | |
| SBS | Chr1 | 42310826 | G-A | Homo | INTRON | |
| SBS | Chr1 | 43035261 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake01g474700 |
| SBS | Chr2 | 13813517 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 21232088 | T-C | Hetero | INTRON | |
| SBS | Chr2 | 22602249 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2751689 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23623451 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 23623454 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25559763 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 26328360 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29170233 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 31971799 | C-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 36570016 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 25016880 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 2177705 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 6774418 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 12467095 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 2040432 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 5807377 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17793253 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7110364 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24389310 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1013478 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1488533 | G-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5283344 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 7644720 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 17146430 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 3605556 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3605656 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 13578634 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14910113 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16735441 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 5383162 | T-G | Homo | INTERGENIC | |
| SBS | Chr12 | 12745604 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 14416532 | G-C | Homo | INTERGENIC | |
| SBS | Chr12 | 15746658 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 24659385 | T-C | Hetero | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 6378295 | 6378296 | 1 | |
| Deletion | Chr3 | 8086963 | 8086966 | 3 | |
| Deletion | Chr1 | 16580890 | 16580896 | 6 | |
| Deletion | Chr9 | 18373433 | 18373434 | 1 | |
| Deletion | Chr3 | 18748840 | 18748844 | 4 | |
| Deletion | Chr6 | 19979566 | 19979567 | 1 | |
| Deletion | Chr11 | 20607688 | 20607690 | 2 | |
| Deletion | Chr6 | 28933178 | 28933181 | 3 | OsKitaake06g267303 |
| Deletion | Chr4 | 29211607 | 29211608 | 1 | |
| Deletion | Chr1 | 34046740 | 34046745 | 5 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 10666261 | 10666264 | 2 | |
| Insertion | Chr7 | 2748343 | 2748348 | 4 | |
| Insertion | Chr10 | 20335601 | 20335604 | 2 | |
| Insertion | Chr12 | 787124 | 787129 | 4 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 2573980 | Chr4 | 26945301 | OsKitaake04g195500 |