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Mutant Information

Mutant Name	FN_546-3-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_546-3-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8346647 C-T Hetero INTERGENIC
SBS Chr1 24567931 C-T Hetero INTERGENIC
SBS Chr1 24568848 C-T Hetero INTERGENIC
SBS Chr2 18019982 T-A Homo INTERGENIC
SBS Chr2 24559839 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g244100
SBS Chr2 27079801 G-A Hetero INTERGENIC
SBS Chr2 30525699 C-T Hetero INTERGENIC
SBS Chr2 35981507 T-A Homo UTR_3_PRIME
SBS Chr3 15899694 A-C Homo INTERGENIC
SBS Chr3 32142928 G-A Hetero INTERGENIC
SBS Chr4 9304728 G-T Hetero UTR_3_PRIME
SBS Chr4 9304729 G-T Hetero UTR_3_PRIME
SBS Chr4 16505741 G-C Hetero SYNONYMOUS_CODING
SBS Chr4 18215906 C-T Hetero INTERGENIC
SBS Chr4 18656724 G-A Hetero INTERGENIC
SBS Chr5 11088620 A-C Homo INTRON
SBS Chr5 19552861 G-A Hetero INTERGENIC
SBS Chr5 28799501 C-T Hetero INTERGENIC
SBS Chr6 5454183 T-G Hetero UTR_5_PRIME
SBS Chr6 17615062 A-G Hetero UTR_3_PRIME
SBS Chr7 16350287 G-T Homo INTERGENIC
SBS Chr8 10984606 G-A Hetero INTERGENIC
SBS Chr8 17274750 G-A Homo INTERGENIC
SBS Chr8 22575570 A-C Homo NON_SYNONYMOUS_CODING OsKitaake08g172900
SBS Chr9 2519324 C-T Homo INTERGENIC
SBS Chr9 8829224 C-T Homo INTERGENIC
SBS Chr9 9181354 G-A Homo INTRON
SBS Chr9 18233313 C-A Homo INTERGENIC
SBS Chr9 21246273 T-C Homo INTERGENIC
SBS Chr10 4461249 C-T Hetero INTERGENIC
SBS Chr11 19005305 C-T Homo INTERGENIC
SBS Chr11 20535426 G-A Homo INTRON
SBS Chr11 27542798 G-A Hetero INTERGENIC
SBS Chr12 13999811 A-T Hetero INTERGENIC
SBS Chr12 14549452 T-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 624737 624739 2
Deletion Chr9 1206775 1206779 4
Deletion Chr4 3463818 3463819 1
Deletion Chr4 5557682 5557684 2
Deletion Chr6 10407801 10407813 12
Deletion Chr2 10662281 10662283 2
Deletion Chr11 10685198 10685201 3
Deletion Chr3 14664060 14664070 10
Deletion Chr1 17547740 17547741 1
Deletion Chr5 17601470 17601474 4
Deletion Chr4 19936369 19936371 2
Deletion Chr3 20654049 20654051 2
Deletion Chr7 21631582 21631583 1
Deletion Chr2 22957636 22957639 3
Deletion Chr12 25378272 25378276 4
Deletion Chr11 27301161 27301169 8
Deletion Chr2 30266954 30266955 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 7811444 7811447 2
Insertion Chr11 21733042 21733045 2
Insertion Chr12 17238951 17238954 2
Insertion Chr12 22295796 22295798 1
Insertion Chr12 25511957 25511960 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 24150378 24160080 OsKitaake01g232100
Inversion Chr1 24150391 24160097 OsKitaake01g232100
Inversion Chr8 24213337 24257719 OsKitaake08g187300
Inversion Chr2 29499029 29921664 OsKitaake02g303000
Inversion Chr2 29499032 29921661 OsKitaake02g303000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5084122 Chr3 19275568

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8346647	C-T	Hetero	INTERGENIC
SBS	Chr1	24567931	C-T	Hetero	INTERGENIC
SBS	Chr1	24568848	C-T	Hetero	INTERGENIC
SBS	Chr2	18019982	T-A	Homo	INTERGENIC
SBS	Chr2	24559839	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g244100
SBS	Chr2	27079801	G-A	Hetero	INTERGENIC
SBS	Chr2	30525699	C-T	Hetero	INTERGENIC
SBS	Chr2	35981507	T-A	Homo	UTR_3_PRIME
SBS	Chr3	15899694	A-C	Homo	INTERGENIC
SBS	Chr3	32142928	G-A	Hetero	INTERGENIC
SBS	Chr4	9304728	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	9304729	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	16505741	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr4	18215906	C-T	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Hetero	INTERGENIC
SBS	Chr5	11088620	A-C	Homo	INTRON
SBS	Chr5	19552861	G-A	Hetero	INTERGENIC
SBS	Chr5	28799501	C-T	Hetero	INTERGENIC
SBS	Chr6	5454183	T-G	Hetero	UTR_5_PRIME
SBS	Chr6	17615062	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	16350287	G-T	Homo	INTERGENIC
SBS	Chr8	10984606	G-A	Hetero	INTERGENIC
SBS	Chr8	17274750	G-A	Homo	INTERGENIC
SBS	Chr8	22575570	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g172900
SBS	Chr9	2519324	C-T	Homo	INTERGENIC
SBS	Chr9	8829224	C-T	Homo	INTERGENIC
SBS	Chr9	9181354	G-A	Homo	INTRON
SBS	Chr9	18233313	C-A	Homo	INTERGENIC
SBS	Chr9	21246273	T-C	Homo	INTERGENIC
SBS	Chr10	4461249	C-T	Hetero	INTERGENIC
SBS	Chr11	19005305	C-T	Homo	INTERGENIC
SBS	Chr11	20535426	G-A	Homo	INTRON
SBS	Chr11	27542798	G-A	Hetero	INTERGENIC
SBS	Chr12	13999811	A-T	Hetero	INTERGENIC
SBS	Chr12	14549452	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	624737	624739	2
Deletion	Chr9	1206775	1206779	4
Deletion	Chr4	3463818	3463819	1
Deletion	Chr4	5557682	5557684	2
Deletion	Chr6	10407801	10407813	12
Deletion	Chr2	10662281	10662283	2
Deletion	Chr11	10685198	10685201	3
Deletion	Chr3	14664060	14664070	10
Deletion	Chr1	17547740	17547741	1
Deletion	Chr5	17601470	17601474	4
Deletion	Chr4	19936369	19936371	2
Deletion	Chr3	20654049	20654051	2
Deletion	Chr7	21631582	21631583	1
Deletion	Chr2	22957636	22957639	3
Deletion	Chr12	25378272	25378276	4
Deletion	Chr11	27301161	27301169	8
Deletion	Chr2	30266954	30266955	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	24150378	24160080	OsKitaake01g232100
Inversion	Chr1	24150391	24160097	OsKitaake01g232100
Inversion	Chr8	24213337	24257719	OsKitaake08g187300
Inversion	Chr2	29499029	29921664	OsKitaake02g303000
Inversion	Chr2	29499032	29921661	OsKitaake02g303000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes