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Mutant Information

Mutant Name	FN_552-1-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_552-1-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2295343	T-A	Hetero	INTERGENIC
SBS	Chr1	4179814	C-A	Hetero	INTERGENIC
SBS	Chr1	6153581	G-A	Homo	INTERGENIC
SBS	Chr1	40834949	G-C	Hetero	UTR_5_PRIME
SBS	Chr2	13634905	C-T	Hetero	INTERGENIC
SBS	Chr2	32646434	G-A	Hetero	INTERGENIC
SBS	Chr3	1865223	G-T	Hetero	INTRON
SBS	Chr3	10270039	G-T	Hetero	INTERGENIC
SBS	Chr3	23866212	C-T	Homo	INTERGENIC
SBS	Chr3	35024274	T-A	Hetero	INTERGENIC
SBS	Chr4	28555728	A-T	Homo	INTRON
SBS	Chr4	31079103	C-T	Hetero	INTERGENIC
SBS	Chr5	9244923	C-T	Hetero	INTERGENIC
SBS	Chr5	15394105	C-T	Hetero	INTERGENIC
SBS	Chr6	10722311	G-T	Hetero	INTERGENIC
SBS	Chr6	13140067	G-A	Hetero	INTERGENIC
SBS	Chr6	17398209	T-C	Hetero	INTERGENIC
SBS	Chr6	24720312	A-G	Homo	INTRON
SBS	Chr6	30415180	G-A	Homo	INTERGENIC
SBS	Chr7	5893609	T-C	Homo	INTERGENIC
SBS	Chr7	7552815	T-A	Hetero	INTERGENIC
SBS	Chr8	9856985	G-A	Homo	INTERGENIC
SBS	Chr9	7126473	G-T	Homo	INTERGENIC
SBS	Chr9	12918652	C-T	Hetero	INTERGENIC
SBS	Chr9	13989127	C-T	Homo	INTERGENIC
SBS	Chr10	4700465	A-G	Homo	INTERGENIC
SBS	Chr10	22687816	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g187800
SBS	Chr11	9262964	A-G	Hetero	INTERGENIC
SBS	Chr11	10699034	G-A	Hetero	INTERGENIC
SBS	Chr11	12608853	G-C	Hetero	INTERGENIC
SBS	Chr11	14081726	T-C	Hetero	INTRON
SBS	Chr11	16356850	G-A	Hetero	INTERGENIC
SBS	Chr11	22055607	C-A	Homo	INTERGENIC
SBS	Chr12	11627746	A-G	Homo	INTERGENIC
SBS	Chr12	14740976	C-T	Homo	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	672644	672654	10
Deletion	Chr4	1587237	1587238	1
Deletion	Chr7	4646001	4658000	11999	3
Deletion	Chr12	5167537	5167542	5
Deletion	Chr11	5198394	5198397	3
Deletion	Chr12	9783302	9783310	8
Deletion	Chr2	10813419	10813422	3
Deletion	Chr10	12382660	12382666	6
Deletion	Chr5	14275041	14275061	20
Deletion	Chr2	14674573	14674577	4
Deletion	Chr9	14756783	14756786	3
Deletion	Chr2	19119342	19119347	5
Deletion	Chr3	24159895	24159900	5
Deletion	Chr11	24338107	24338116	9
Deletion	Chr8	24571748	24571753	5	OsKitaake08g191300
Deletion	Chr5	25026919	25026927	8

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr4	17689269	17689272	2
Insertion	Chr6	16503527	16503530	2
Insertion	Chr10	7751577	7751580	2
Insertion	Chr10	22488840	22488843	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	27896869	27913550
Inversion	Chr4	27896878	27913552

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	17627456	Chr2	26508206	OsKitaake10g120900
Translocation	Chr10	17627469	Chr2	26508083	OsKitaake10g120900