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Mutant Information

Mutant Name	FN_769-4-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_769-4-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14980744	G-T	Homo	INTRON
SBS	Chr1	18179202	C-T	Hetero	INTERGENIC
SBS	Chr1	20480098	G-A	Homo	INTERGENIC
SBS	Chr1	30664041	T-G	Homo	INTERGENIC
SBS	Chr2	8433189	T-A	Homo	INTERGENIC
SBS	Chr2	21517432	C-T	Homo	INTERGENIC
SBS	Chr2	23946426	A-C	Homo	INTERGENIC
SBS	Chr3	9454539	G-A	Hetero	INTERGENIC
SBS	Chr3	10635721	C-T	Hetero	INTERGENIC
SBS	Chr3	33661154	C-T	Homo	STOP_GAINED	OsKitaake03g362100
SBS	Chr4	10816256	C-G	Hetero	INTERGENIC
SBS	Chr4	27113199	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g197100
SBS	Chr5	4796737	T-G	Hetero	INTERGENIC
SBS	Chr5	19200904	C-T	Homo	INTERGENIC
SBS	Chr5	19204743	C-T	Homo	INTERGENIC
SBS	Chr5	30122426	G-A	Homo	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr7	5699511	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g069300
SBS	Chr8	11270924	T-C	Homo	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr8	27123951	A-G	Hetero	INTERGENIC
SBS	Chr9	12473	T-C	Hetero	INTERGENIC
SBS	Chr9	1428994	A-G	Homo	INTRON
SBS	Chr9	5363773	A-T	Homo	INTERGENIC
SBS	Chr9	6801921	G-A	Homo	INTRON
SBS	Chr9	11012913	G-T	Homo	INTERGENIC
SBS	Chr10	2877770	T-C	Hetero	INTERGENIC
SBS	Chr10	16417873	C-T	Homo	INTERGENIC
SBS	Chr10	23249459	G-A	Hetero	INTERGENIC
SBS	Chr11	13426736	T-C	Homo	INTERGENIC
SBS	Chr11	17909354	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g140200
SBS	Chr11	24243932	G-A	Homo	INTERGENIC
SBS	Chr12	10596198	A-G	Homo	INTERGENIC
SBS	Chr12	20038730	A-T	Hetero	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	535766	535774	8	OsKitaake02g008000
Deletion	Chr2	2146664	2146673	9	OsKitaake02g032401
Deletion	Chr6	3207360	3207374	14
Deletion	Chr10	4599028	4599030	2
Deletion	Chr4	8868254	8868260	6
Deletion	Chr10	9504589	9504595	6
Deletion	Chr12	10472793	10472794	1
Deletion	Chr10	12139001	12234000	94999	8
Deletion	Chr11	12882473	12882482	9	OsKitaake11g114000
Deletion	Chr11	13461052	13461061	9
Deletion	Chr11	16319956	16319961	5
Deletion	Chr6	19474967	19474973	6
Deletion	Chr11	24780565	24780566	1
Deletion	Chr3	25430533	25430534	1
Deletion	Chr1	32390646	32390656	10
Deletion	Chr4	36509297	36509309	12

Insertions: 3

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	43241577	43241580	2
Insertion	Chr3	17052951	17052953	1
Insertion	Chr8	1030736	1030738	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	11255270	12232120	OsKitaake10g072900
Inversion	Chr10	11751844	12139491	OsKitaake10g070400