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| Mutant Information |
|---|
| Mutant Name | FN_770-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_770-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 39
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16474649 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 21309446 | C-G | Homo | INTERGENIC | |
| SBS | Chr1 | 26243391 | G-T | Homo | INTRON | |
| SBS | Chr1 | 26243392 | A-T | Homo | INTRON | |
| SBS | Chr2 | 15678182 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 30868020 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 1933663 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11213163 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 12554896 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 30456664 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 4632454 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 4752188 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20953519 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16409936 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 25527117 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1367253 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 2824065 | C-T | Homo | INTRON | |
| SBS | Chr7 | 4863239 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 5662036 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g068900 |
| SBS | Chr7 | 6339730 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19385641 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 24132911 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 162529 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5872527 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7116146 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 7135329 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16430569 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17205653 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 27279719 | G-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g224300 |
| SBS | Chr8 | 27279720 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 27409057 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1824178 | A-T | Homo | INTRON | |
| SBS | Chr10 | 1824180 | A-T | Homo | INTRON | |
| SBS | Chr10 | 1824181 | C-T | Homo | INTRON | |
| SBS | Chr10 | 9520110 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28702491 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 28702492 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7786725 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 8459543 | G-T | Hetero | INTERGENIC |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2939074 | 2939078 | 4 | |
| Deletion | Chr7 | 3914464 | 3914470 | 6 | |
| Deletion | Chr10 | 6705001 | 6865000 | 159999 | 6 |
| Deletion | Chr10 | 7847040 | 7847048 | 8 | |
| Deletion | Chr3 | 12254528 | 12254529 | 1 | |
| Deletion | Chr6 | 12711122 | 12711125 | 3 | OsKitaake06g135900 |
| Deletion | Chr8 | 13602555 | 13602557 | 2 | |
| Deletion | Chr5 | 15146041 | 15146051 | 10 | |
| Deletion | Chr5 | 16936768 | 16936773 | 5 | |
| Deletion | Chr7 | 18950539 | 18950540 | 1 | |
| Deletion | Chr1 | 19385639 | 19385651 | 12 | |
| Deletion | Chr3 | 20753435 | 20753440 | 5 | |
| Deletion | Chr5 | 21063001 | 21156000 | 92999 | 10 |
| Deletion | Chr1 | 26434071 | 26434074 | 3 | |
| Deletion | Chr6 | 27480001 | 27487000 | 6999 | OsKitaake06g248300 |
| Deletion | Chr6 | 27570896 | 27570901 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 4499896 | 4499902 | 5 | |
| Insertion | Chr9 | 5031665 | 5031668 | 2 | |
| Insertion | Chr12 | 12107149 | 12107152 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 20871190 | 21062948 | OsKitaake05g167100 |
| Inversion | Chr5 | 20871195 | 21156230 | 2 |