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| Mutant Information |
|---|
| Mutant Name | FN_772-3-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_772-3-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 35
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6098226 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16569209 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 16887085 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18079120 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 18771467 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 99189 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 160255 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17922662 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 20069361 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 20534180 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 23874195 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 26210001 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 32441782 | A-G | Homo | SPLICE_SITE_REGION | |
| SBS | Chr4 | 33336815 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 5390514 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 15150346 | A-G | Homo | INTERGENIC | |
| SBS | Chr5 | 21828444 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4952706 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 9501017 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 10833118 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19925078 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 21700585 | A-G | Homo | INTRON | |
| SBS | Chr6 | 22603738 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 6434427 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 11819056 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 14152630 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15279665 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27410921 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g225800 |
| SBS | Chr9 | 3557067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 965793 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9222582 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9631296 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 14478589 | A-C | Hetero | INTRON | |
| SBS | Chr11 | 16596714 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11996141 | G-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 5945801 | 5945802 | 1 | OsKitaake02g081800 |
| Deletion | Chr2 | 7328699 | 7328702 | 3 | |
| Deletion | Chr3 | 8724401 | 8724405 | 4 | |
| Deletion | Chr9 | 9840213 | 9840214 | 1 | |
| Deletion | Chr1 | 10613491 | 10613496 | 5 | |
| Deletion | Chr3 | 15671205 | 15671214 | 9 | |
| Deletion | Chr5 | 16741208 | 16741210 | 2 | |
| Deletion | Chr9 | 17199676 | 17199682 | 6 | |
| Deletion | Chr12 | 22101895 | 22101897 | 2 | |
| Deletion | Chr7 | 26589319 | 26589323 | 4 | OsKitaake07g246400 |
| Deletion | Chr7 | 29541001 | 29565000 | 23999 | 4 |
| Deletion | Chr1 | 37055477 | 37055482 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 30529230 | 30529232 | 1 | |
| Insertion | Chr4 | 7483059 | 7483065 | 5 | |
| Insertion | Chr6 | 781992 | 781994 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 29328310 | 29541060 | OsKitaake07g281700 |
| Inversion | Chr7 | 29341581 | 29562630 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 11508 | Chr1 | 24798063 | |
| Translocation | Chr12 | 5652530 | Chr7 | 29368927 | |
| Translocation | Chr12 | 5654251 | Chr7 | 29368923 | |
| Translocation | Chr9 | 17502730 | Chr5 | 15943 | |
| Translocation | Chr9 | 17502733 | Chr1 | 24796453 | OsKitaake01g239400 |