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Mutant Information

Mutant Name	FN_776-5-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_776-5-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1798077 C-A Hetero INTERGENIC
SBS Chr1 18540445 A-T Homo INTERGENIC
SBS Chr1 22197530 T-G Homo INTERGENIC
SBS Chr1 42238801 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g465100
SBS Chr2 12368147 C-T Hetero INTERGENIC
SBS Chr2 23134430 G-T Hetero UTR_3_PRIME
SBS Chr2 35555807 C-T Homo UTR_3_PRIME
SBS Chr3 4641635 G-T Hetero INTRON
SBS Chr4 2804910 G-C Homo INTERGENIC
SBS Chr4 12612296 T-A Hetero INTERGENIC
SBS Chr4 14527288 G-A Hetero INTERGENIC
SBS Chr4 18170518 T-G Hetero INTERGENIC
SBS Chr6 23746028 A-T Homo INTERGENIC
SBS Chr6 24385801 A-G Hetero INTERGENIC
SBS Chr7 8151144 C-T Hetero INTERGENIC
SBS Chr7 10514995 A-T Hetero INTERGENIC
SBS Chr7 12254799 C-T Hetero INTERGENIC
SBS Chr7 19246361 C-T Hetero INTERGENIC
SBS Chr7 20284024 T-A Hetero INTRON
SBS Chr8 4949057 C-T Homo INTERGENIC
SBS Chr9 8887381 A-T Homo INTERGENIC
SBS Chr9 9479117 G-A Homo UTR_3_PRIME
SBS Chr9 17239318 T-C Hetero INTERGENIC
SBS Chr9 20162152 G-T Hetero INTRON
SBS Chr9 20162153 A-T Hetero INTRON
SBS Chr11 8823939 G-A Homo INTERGENIC
SBS Chr11 8982230 T-C Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 838006 838011 5
Deletion Chr3 3127778 3127779 1
Deletion Chr9 8314483 8314484 1
Deletion Chr9 8783001 8798000 14999
Deletion Chr8 9609483 9609485 2
Deletion Chr4 16286721 16286722 1
Deletion Chr5 16961144 16961150 6
Deletion Chr10 18389529 18389546 17
Deletion Chr10 18407019 18407032 13
Deletion Chr12 18726559 18726588 29
Deletion Chr3 22021823 22021833 10
Deletion Chr2 22830001 22851000 20999 3
Deletion Chr12 23508828 23508838 10
Deletion Chr8 27048357 27048359 2
Deletion Chr3 29984401 29984405 4
Deletion Chr3 35289037 35289038 1
Deletion Chr1 41148124 41148126 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6339526 6339529 2
Insertion Chr5 15233902 15233905 2

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 15299884 Chr1 1514334
Translocation Chr7 20350198 Chr2 22901218 2
Translocation Chr10 22102529 Chr9 8798249 OsKitaake10g179100
Translocation Chr10 22102566 Chr9 8782883 OsKitaake10g179100
Translocation Chr7 24997548 Chr2 22830597
Translocation Chr5 27963325 Chr4 36306114 2
Translocation Chr4 36306108 Chr2 22901206 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1798077	C-A	Hetero	INTERGENIC
SBS	Chr1	18540445	A-T	Homo	INTERGENIC
SBS	Chr1	22197530	T-G	Homo	INTERGENIC
SBS	Chr1	42238801	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g465100
SBS	Chr2	12368147	C-T	Hetero	INTERGENIC
SBS	Chr2	23134430	G-T	Hetero	UTR_3_PRIME
SBS	Chr2	35555807	C-T	Homo	UTR_3_PRIME
SBS	Chr3	4641635	G-T	Hetero	INTRON
SBS	Chr4	2804910	G-C	Homo	INTERGENIC
SBS	Chr4	12612296	T-A	Hetero	INTERGENIC
SBS	Chr4	14527288	G-A	Hetero	INTERGENIC
SBS	Chr4	18170518	T-G	Hetero	INTERGENIC
SBS	Chr6	23746028	A-T	Homo	INTERGENIC
SBS	Chr6	24385801	A-G	Hetero	INTERGENIC
SBS	Chr7	8151144	C-T	Hetero	INTERGENIC
SBS	Chr7	10514995	A-T	Hetero	INTERGENIC
SBS	Chr7	12254799	C-T	Hetero	INTERGENIC
SBS	Chr7	19246361	C-T	Hetero	INTERGENIC
SBS	Chr7	20284024	T-A	Hetero	INTRON
SBS	Chr8	4949057	C-T	Homo	INTERGENIC
SBS	Chr9	8887381	A-T	Homo	INTERGENIC
SBS	Chr9	9479117	G-A	Homo	UTR_3_PRIME
SBS	Chr9	17239318	T-C	Hetero	INTERGENIC
SBS	Chr9	20162152	G-T	Hetero	INTRON
SBS	Chr9	20162153	A-T	Hetero	INTRON
SBS	Chr11	8823939	G-A	Homo	INTERGENIC
SBS	Chr11	8982230	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	838006	838011	5
Deletion	Chr3	3127778	3127779	1
Deletion	Chr9	8314483	8314484	1
Deletion	Chr9	8783001	8798000	14999
Deletion	Chr8	9609483	9609485	2
Deletion	Chr4	16286721	16286722	1
Deletion	Chr5	16961144	16961150	6
Deletion	Chr10	18389529	18389546	17
Deletion	Chr10	18407019	18407032	13
Deletion	Chr12	18726559	18726588	29
Deletion	Chr3	22021823	22021833	10
Deletion	Chr2	22830001	22851000	20999	3
Deletion	Chr12	23508828	23508838	10
Deletion	Chr8	27048357	27048359	2
Deletion	Chr3	29984401	29984405	4
Deletion	Chr3	35289037	35289038	1
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15299884	Chr1	1514334
Translocation	Chr7	20350198	Chr2	22901218	2
Translocation	Chr10	22102529	Chr9	8798249	OsKitaake10g179100
Translocation	Chr10	22102566	Chr9	8782883	OsKitaake10g179100
Translocation	Chr7	24997548	Chr2	22830597
Translocation	Chr5	27963325	Chr4	36306114	2
Translocation	Chr4	36306108	Chr2	22901206	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes