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Mutant Information

Mutant Name	FN_777-2-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_777-2-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10391791	C-A	Hetero	INTERGENIC
SBS	Chr1	27399062	C-T	Homo	INTERGENIC
SBS	Chr1	27761102	G-A	Hetero	INTERGENIC
SBS	Chr1	28924345	G-A	Homo	INTRON
SBS	Chr1	42403375	G-A	Homo	INTERGENIC
SBS	Chr2	16766241	T-A	Hetero	INTERGENIC
SBS	Chr3	4947991	C-T	Hetero	INTRON
SBS	Chr3	37215709	A-G	Hetero	INTRON
SBS	Chr4	26856286	A-G	Homo	INTRON
SBS	Chr5	2632515	T-C	Hetero	INTERGENIC
SBS	Chr5	23578855	G-C	Hetero	INTERGENIC
SBS	Chr6	37612	G-A	Hetero	INTERGENIC
SBS	Chr6	14957938	C-T	Homo	INTERGENIC
SBS	Chr6	25706342	C-T	Homo	INTERGENIC
SBS	Chr6	27704500	C-A	Homo	INTERGENIC
SBS	Chr7	252271	C-A	Hetero	INTERGENIC
SBS	Chr7	6898491	C-T	Hetero	INTERGENIC
SBS	Chr7	8244813	G-T	Hetero	INTERGENIC
SBS	Chr7	9000187	A-G	Hetero	INTERGENIC
SBS	Chr7	22612321	G-A	Hetero	INTERGENIC
SBS	Chr7	26662631	A-C	Homo	INTRON
SBS	Chr7	26662632	C-A	Homo	INTRON
SBS	Chr7	26662633	T-A	Homo	INTRON
SBS	Chr8	1651934	A-G	Hetero	INTERGENIC
SBS	Chr8	19784110	C-A	Hetero	INTERGENIC
SBS	Chr8	19784111	C-T	Hetero	INTERGENIC
SBS	Chr8	27241564	C-T	Homo	INTERGENIC
SBS	Chr9	2938526	C-T	Homo	INTRON
SBS	Chr9	3427099	G-A	Homo	INTERGENIC
SBS	Chr10	5050193	G-A	Hetero	INTERGENIC
SBS	Chr10	9146573	C-T	Homo	INTERGENIC
SBS	Chr11	20307327	G-A	Homo	INTERGENIC
SBS	Chr11	20307332	G-A	Homo	INTERGENIC
SBS	Chr12	476222	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr12	3882715	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr12	15853795	C-T	Homo	INTERGENIC
SBS	Chr12	18040289	G-A	Hetero	INTERGENIC
SBS	Chr12	19458200	C-T	Hetero	INTERGENIC
SBS	Chr12	22152728	G-A	Homo	INTRON
SBS	Chr12	25298437	A-C	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	5845001	5960000	114999	24
Deletion	Chr2	6602037	6602041	4
Deletion	Chr3	8722358	8722360	2
Deletion	Chr3	11578409	11578410	1
Deletion	Chr12	12557434	12557435	1
Deletion	Chr10	18410062	18410070	8	OsKitaake10g130400
Deletion	Chr8	20117894	20117897	3
Deletion	Chr7	23898671	23898672	1
Deletion	Chr12	24157727	24157734	7
Deletion	Chr12	25291564	25291573	9
Deletion	Chr1	28937004	28937016	12
Deletion	Chr5	29009001	29032000	22999	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	41871020	41871027	6
Insertion	Chr8	8654625	8654628	2
Insertion	Chr11	19653789	19653793	3
Insertion	Chr12	24148181	24148186	4

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4007721	4758730	OsKitaake07g058600
Inversion	Chr7	4007724	4758731	OsKitaake07g058600
Inversion	Chr3	5175365	5725341	OsKitaake03g074000
Inversion	Chr3	5175383	5727820	OsKitaake03g074000
Inversion	Chr10	6703327	6704471
Inversion	Chr10	6703335	6704472
Inversion	Chr6	19207187	19221496
Inversion	Chr6	19207189	19221501

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	4913273	Chr1	23049011	OsKitaake03g070800
Translocation	Chr3	4939513	Chr1	23049026
Translocation	Chr7	26680159	Chr1	28177418	OsKitaake01g273800