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| Mutant Information |
|---|
| Mutant Name | FN_786-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_786-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 33707192 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 35324316 | G-A | Homo | INTRON | |
| SBS | Chr1 | 42179082 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43138533 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 14914324 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 33301908 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 21270732 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 24994016 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34954026 | G-A | Hetero | INTRON | |
| SBS | Chr4 | 4228986 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7719601 | G-T | Hetero | INTRON | |
| SBS | Chr4 | 9035992 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9035993 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 13354342 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 11093303 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 26674632 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 6651547 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16858185 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17963076 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 18738505 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15295567 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17204387 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 23392480 | C-T | Homo | INTRON | |
| SBS | Chr8 | 26038438 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 29191067 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3314436 | G-T | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr9 | 8855805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3527234 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 14560010 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23397105 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 4235138 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11366570 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 3194154 | G-A | Homo | INTRON | |
| SBS | Chr12 | 9954412 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 11284176 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15240201 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 16487422 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 26548935 | A-T | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 993918 | 993925 | 7 | |
| Deletion | Chr5 | 5704461 | 5704463 | 2 | |
| Deletion | Chr3 | 6667412 | 6667414 | 2 | OsKitaake03g094800 |
| Deletion | Chr10 | 9380658 | 9380659 | 1 | |
| Deletion | Chr11 | 10158020 | 10158022 | 2 | |
| Deletion | Chr8 | 10737228 | 10737229 | 1 | |
| Deletion | Chr9 | 10934369 | 10934373 | 4 | |
| Deletion | Chr4 | 20852096 | 20852101 | 5 | |
| Deletion | Chr11 | 22622351 | 22622356 | 5 | |
| Deletion | Chr1 | 23123433 | 23123443 | 10 | |
| Deletion | Chr4 | 25310633 | 25310634 | 1 | OsKitaake04g172000 |
| Deletion | Chr5 | 27119354 | 27119357 | 3 | |
| Deletion | Chr1 | 29201852 | 29201854 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 11567015 | 11567018 | 2 | |
| Insertion | Chr5 | 18061818 | 18061823 | 4 | |
| Insertion | Chr8 | 1196962 | 1196965 | 2 | |
| Insertion | Chr8 | 9393884 | 9393889 | 4 |