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Mutant Information

Mutant Name	FN_788-1-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_788-1-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21105318	A-T	Homo	INTERGENIC
SBS	Chr1	27302909	T-A	Homo	INTERGENIC
SBS	Chr1	27887564	C-T	Hetero	INTERGENIC
SBS	Chr1	33366643	A-T	Hetero	INTRON
SBS	Chr2	11419570	G-A	Hetero	INTERGENIC
SBS	Chr3	13037957	T-C	Homo	INTERGENIC
SBS	Chr3	13133193	A-G	Hetero	INTERGENIC
SBS	Chr3	20516313	G-A	Homo	INTERGENIC
SBS	Chr4	4800303	G-A	Hetero	INTERGENIC
SBS	Chr4	6622174	A-T	Homo	INTERGENIC
SBS	Chr4	23366906	T-C	Homo	INTRON
SBS	Chr4	36087842	G-A	Hetero	INTERGENIC
SBS	Chr5	4586524	C-A	Homo	UTR_5_PRIME
SBS	Chr5	19992984	A-T	Homo	INTERGENIC
SBS	Chr6	5986110	G-A	Homo	INTERGENIC
SBS	Chr6	13913399	A-G	Hetero	INTRON
SBS	Chr6	15472196	A-C	Hetero	INTERGENIC
SBS	Chr6	18806565	C-T	Homo	INTERGENIC
SBS	Chr7	16931285	C-A	Homo	INTERGENIC
SBS	Chr7	24039318	C-T	Homo	INTERGENIC
SBS	Chr8	13209971	A-C	Homo	INTERGENIC
SBS	Chr8	13209974	G-A	Homo	INTERGENIC
SBS	Chr8	20114426	G-A	Homo	INTERGENIC
SBS	Chr9	10689923	G-T	Hetero	INTERGENIC
SBS	Chr10	4616181	G-A	Hetero	INTERGENIC
SBS	Chr11	13496830	C-A	Hetero	INTERGENIC
SBS	Chr11	16021907	A-G	Hetero	INTERGENIC
SBS	Chr11	20277285	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	23374786	G-A	Hetero	UTR_5_PRIME
SBS	Chr11	26550589	C-T	Hetero	INTERGENIC
SBS	Chr12	7390377	G-A	Homo	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	211568	211569	1
Deletion	Chr3	2210231	2210245	14
Deletion	Chr12	3261298	3261299	1
Deletion	Chr3	4718406	4718407	1
Deletion	Chr9	12789276	12789277	1
Deletion	Chr6	13913387	13913388	1
Deletion	Chr9	15505381	15505382	1
Deletion	Chr2	17661777	17661782	5
Deletion	Chr5	20291898	20291900	2
Deletion	Chr1	23040974	23040976	2	OsKitaake01g219500
Deletion	Chr11	23384001	23384008	7
Deletion	Chr4	28293866	28293869	3	OsKitaake04g210600
Deletion	Chr2	30180308	30180309	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	409104	409107	2
Insertion	Chr6	20553534	20553537	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19870551	20650014
Inversion	Chr4	20650015	20720310	OsKitaake04g112300
Inversion	Chr11	22253830	22438721
Inversion	Chr11	22253846	22438730
Inversion	Chr2	22921687	23008193	OsKitaake02g223400
Inversion	Chr2	22921700	23008196	OsKitaake02g223400

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16010106	Chr6	25761275	OsKitaake11g128500
Translocation	Chr4	19870543	Chr1	8219645
Translocation	Chr4	20365755	Chr1	8197847	OsKitaake01g102300