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| Mutant Information |
|---|
| Mutant Name | FN_789-2-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_789-2-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6976067 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26732287 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 17463029 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g175500 |
| SBS | Chr2 | 19837846 | T-A | Hetero | INTRON | |
| SBS | Chr2 | 23018910 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 34144396 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 863211 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 2703516 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 15365881 | C-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 27488134 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11093272 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake07g104400 |
| SBS | Chr7 | 24602670 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5619953 | T-G | Homo | INTRON | |
| SBS | Chr8 | 12270974 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 16063820 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 15703155 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 18271368 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 23776324 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 23776325 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7624368 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10433076 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18849704 | G-C | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1341001 | 1398000 | 56999 | |
| Deletion | Chr8 | 2483855 | 2483856 | 1 | |
| Deletion | Chr8 | 3395816 | 3395825 | 9 | |
| Deletion | Chr4 | 6572376 | 6572377 | 1 | OsKitaake04g033300 |
| Deletion | Chr7 | 7952135 | 7952139 | 4 | |
| Deletion | Chr8 | 8033001 | 8041000 | 7999 | |
| Deletion | Chr8 | 8854412 | 8854427 | 15 | |
| Deletion | Chr4 | 12300497 | 12300499 | 2 | |
| Deletion | Chr7 | 20910704 | 20910716 | 12 | |
| Deletion | Chr2 | 32333480 | 32333489 | 9 | OsKitaake02g330300 |
| Deletion | Chr2 | 32413090 | 32413094 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr11 | 17083238 | 17083241 | 2 |