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Mutant Information

Mutant Name	FN_789-3-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_789-3-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1275513	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	1275514	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g015200
SBS	Chr1	21616904	C-A	Hetero	INTERGENIC
SBS	Chr1	28071290	T-C	Hetero	INTERGENIC
SBS	Chr3	166018	A-G	Hetero	INTRON
SBS	Chr3	35936788	G-A	Homo	INTERGENIC
SBS	Chr4	2024410	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g013400
SBS	Chr4	2531128	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g015500
SBS	Chr4	14797376	G-A	Homo	INTERGENIC
SBS	Chr4	16493515	G-A	Hetero	INTRON
SBS	Chr5	12135619	A-T	Homo	INTERGENIC
SBS	Chr7	23264845	G-T	Homo	INTERGENIC
SBS	Chr8	26510381	C-T	Hetero	INTRON
SBS	Chr9	8039843	A-T	Homo	INTERGENIC
SBS	Chr10	3686021	T-A	Hetero	INTERGENIC
SBS	Chr11	7076595	A-T	Homo	INTERGENIC
SBS	Chr11	13238755	G-C	Homo	INTERGENIC
SBS	Chr11	13238758	C-A	Homo	INTERGENIC

Deletions: 11

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1343001	1398000	54999
Deletion	Chr4	2050417	2050430	13
Deletion	Chr4	2530817	2530818	1	OsKitaake04g015500
Deletion	Chr10	3766001	3937000	170999	11
Deletion	Chr11	5408575	5408576	1
Deletion	Chr3	10784141	10784143	2
Deletion	Chr3	11575001	11596000	20999	3
Deletion	Chr4	14795968	14795969	1
Deletion	Chr4	15837871	15837877	6
Deletion	Chr10	23887569	23887571	2	OsKitaake10g205800
Deletion	Chr4	32708100	32708106	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	10696522	10696525	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	24563094	25231179	2
Inversion	Chr1	25071782	25231179	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	22035535	Chr3	30827802	OsKitaake03g323400
Translocation	Chr9	22035805	Chr3	30827498	OsKitaake03g323350