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Mutant Information

Mutant Name	FN_798-4-2 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_798-4-2 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	507293	T-C	Homo	INTRON
SBS	Chr1	33126499	A-G	Homo	INTRON
SBS	Chr1	43214968	G-A	Hetero	INTRON
SBS	Chr1	43214969	T-A	Hetero	INTRON
SBS	Chr2	15421048	C-T	Hetero	INTERGENIC
SBS	Chr2	26572773	C-T	Hetero	INTERGENIC
SBS	Chr2	31659503	T-A	Hetero	INTERGENIC
SBS	Chr2	33989797	C-A	Homo	INTERGENIC
SBS	Chr2	34004926	G-A	Hetero	INTERGENIC
SBS	Chr3	29267512	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g304900
SBS	Chr4	12341224	T-C	Homo	INTERGENIC
SBS	Chr4	16558003	G-T	Hetero	INTERGENIC
SBS	Chr4	17823955	C-T	Hetero	INTERGENIC
SBS	Chr4	26376332	C-T	Homo	INTERGENIC
SBS	Chr6	29128753	T-A	Homo	INTERGENIC
SBS	Chr7	10492939	G-A	Homo	INTERGENIC
SBS	Chr7	20156392	T-C	Homo	INTRON
SBS	Chr7	20156394	T-C	Homo	INTRON
SBS	Chr9	1297022	G-A	Homo	INTERGENIC
SBS	Chr9	5512313	C-T	Hetero	INTERGENIC
SBS	Chr9	5512322	G-A	Hetero	INTERGENIC
SBS	Chr9	8851245	G-C	Homo	INTERGENIC
SBS	Chr9	11742817	G-T	Hetero	INTERGENIC
SBS	Chr9	14596752	G-A	Hetero	INTERGENIC
SBS	Chr11	22110672	A-T	Homo	INTERGENIC
SBS	Chr12	6113237	A-G	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2254391	2254405	14
Deletion	Chr1	3389921	3389927	6
Deletion	Chr4	7081634	7081636	2
Deletion	Chr8	8566324	8566326	2
Deletion	Chr11	10990958	10990965	7
Deletion	Chr7	18681169	18681170	1
Deletion	Chr12	20097569	20097570	1
Deletion	Chr9	21150077	21150083	6
Deletion	Chr1	21744767	21744770	3
Deletion	Chr4	22669577	22669578	1
Deletion	Chr4	28057172	28057181	9
Deletion	Chr1	29123268	29123278	10	OsKitaake01g283100
Deletion	Chr1	32475538	32475544	6
Deletion	Chr3	37646648	37646652	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr5	19199334	19199336	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28614372	29546029	OsKitaake06g274600
Inversion	Chr6	28614374	29546044	OsKitaake06g274600

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	16844283	Chr2	28097339	OsKitaake02g283400