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Mutant Information

Mutant Name	FN_807-3-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_807-3-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9380560 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g120200
SBS Chr1 40883787 G-T Homo INTERGENIC
SBS Chr2 11845009 A-T Hetero INTRON
SBS Chr2 11957754 C-T Hetero INTERGENIC
SBS Chr2 21790581 C-T Hetero INTERGENIC
SBS Chr3 18603735 G-T Homo INTERGENIC
SBS Chr3 29897810 G-A Hetero INTERGENIC
SBS Chr3 30003795 G-T Hetero INTRON
SBS Chr3 33645645 C-A Hetero INTERGENIC
SBS Chr3 37224798 T-C Hetero INTRON
SBS Chr4 467397 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g003201
SBS Chr4 875638 G-A Hetero INTERGENIC
SBS Chr4 1684427 G-A Hetero INTERGENIC
SBS Chr4 2754896 G-A Hetero INTERGENIC
SBS Chr4 14714080 A-G Homo INTERGENIC
SBS Chr4 27089267 C-T Homo INTERGENIC
SBS Chr4 34485628 A-C Homo INTERGENIC
SBS Chr5 9669610 A-G Homo UTR_5_PRIME
SBS Chr5 21462755 G-A Homo INTRON
SBS Chr6 17935523 G-A Homo INTERGENIC
SBS Chr7 5909775 A-T Homo UTR_5_PRIME
SBS Chr7 7532776 C-G Homo INTERGENIC
SBS Chr7 8297046 C-T Hetero INTERGENIC
SBS Chr7 21365422 T-A Homo INTERGENIC
SBS Chr7 26229232 T-A Homo INTRON
SBS Chr8 8639911 G-A Hetero INTRON
SBS Chr8 23554757 C-A Hetero INTERGENIC
SBS Chr8 26089723 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g207300
SBS Chr9 517744 G-A Homo INTERGENIC
SBS Chr9 14208105 T-A Hetero INTERGENIC
SBS Chr10 12439952 G-A Hetero INTERGENIC
SBS Chr11 2205971 G-A Homo INTERGENIC
SBS Chr11 6644097 C-A Homo INTERGENIC
SBS Chr11 12797571 C-T Homo INTERGENIC
SBS Chr11 25242678 C-G Hetero INTERGENIC
SBS Chr11 26741573 C-T Hetero INTERGENIC
SBS Chr12 10405113 C-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 2412225 2412226 1
Deletion Chr1 3825357 3825358 1 OsKitaake01g051700
Deletion Chr7 4210639 4210644 5
Deletion Chr5 4253921 4253927 6
Deletion Chr10 8897110 8897111 1
Deletion Chr5 9579001 9587000 7999
Deletion Chr10 13801456 13801460 4
Deletion Chr5 15027502 15027513 11
Deletion Chr6 21372873 21372875 2
Deletion Chr2 21660227 21660228 1
Deletion Chr11 24131822 24131828 6 OsKitaake11g193900
Deletion Chr1 25335850 25335853 3
Deletion Chr11 28628537 28628545 8
Deletion Chr3 31796001 31831000 34999 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr3 7109777 7109779 1
Insertion Chr5 821856 821859 2
Insertion Chr10 18436567 18436570 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 14714403 15091589

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 10497575 Chr4 14714414
Translocation Chr9 10497577 Chr4 14714696
Translocation Chr12 21500446 Chr4 18617018

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9380560	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g120200
SBS	Chr1	40883787	G-T	Homo	INTERGENIC
SBS	Chr2	11845009	A-T	Hetero	INTRON
SBS	Chr2	11957754	C-T	Hetero	INTERGENIC
SBS	Chr2	21790581	C-T	Hetero	INTERGENIC
SBS	Chr3	18603735	G-T	Homo	INTERGENIC
SBS	Chr3	29897810	G-A	Hetero	INTERGENIC
SBS	Chr3	30003795	G-T	Hetero	INTRON
SBS	Chr3	33645645	C-A	Hetero	INTERGENIC
SBS	Chr3	37224798	T-C	Hetero	INTRON
SBS	Chr4	467397	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g003201
SBS	Chr4	875638	G-A	Hetero	INTERGENIC
SBS	Chr4	1684427	G-A	Hetero	INTERGENIC
SBS	Chr4	2754896	G-A	Hetero	INTERGENIC
SBS	Chr4	14714080	A-G	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Homo	INTERGENIC
SBS	Chr4	34485628	A-C	Homo	INTERGENIC
SBS	Chr5	9669610	A-G	Homo	UTR_5_PRIME
SBS	Chr5	21462755	G-A	Homo	INTRON
SBS	Chr6	17935523	G-A	Homo	INTERGENIC
SBS	Chr7	5909775	A-T	Homo	UTR_5_PRIME
SBS	Chr7	7532776	C-G	Homo	INTERGENIC
SBS	Chr7	8297046	C-T	Hetero	INTERGENIC
SBS	Chr7	21365422	T-A	Homo	INTERGENIC
SBS	Chr7	26229232	T-A	Homo	INTRON
SBS	Chr8	8639911	G-A	Hetero	INTRON
SBS	Chr8	23554757	C-A	Hetero	INTERGENIC
SBS	Chr8	26089723	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g207300
SBS	Chr9	517744	G-A	Homo	INTERGENIC
SBS	Chr9	14208105	T-A	Hetero	INTERGENIC
SBS	Chr10	12439952	G-A	Hetero	INTERGENIC
SBS	Chr11	2205971	G-A	Homo	INTERGENIC
SBS	Chr11	6644097	C-A	Homo	INTERGENIC
SBS	Chr11	12797571	C-T	Homo	INTERGENIC
SBS	Chr11	25242678	C-G	Hetero	INTERGENIC
SBS	Chr11	26741573	C-T	Hetero	INTERGENIC
SBS	Chr12	10405113	C-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	2412225	2412226	1
Deletion	Chr1	3825357	3825358	1	OsKitaake01g051700
Deletion	Chr7	4210639	4210644	5
Deletion	Chr5	4253921	4253927	6
Deletion	Chr10	8897110	8897111	1
Deletion	Chr5	9579001	9587000	7999
Deletion	Chr10	13801456	13801460	4
Deletion	Chr5	15027502	15027513	11
Deletion	Chr6	21372873	21372875	2
Deletion	Chr2	21660227	21660228	1
Deletion	Chr11	24131822	24131828	6	OsKitaake11g193900
Deletion	Chr1	25335850	25335853	3
Deletion	Chr11	28628537	28628545	8
Deletion	Chr3	31796001	31831000	34999	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14714403	15091589

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes