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| Mutant Information |
|---|
| Mutant Name | FN_809-6-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_809-6-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 32862791 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 28272034 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 9713886 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11142034 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 26484847 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 37486181 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9165725 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1552246 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 28006456 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7848262 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 8635172 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 23740192 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 6307033 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10628766 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26825478 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 27235034 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 2316900 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 8736442 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g080600 |
| SBS | Chr8 | 13474832 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 19666118 | C-G | Hetero | START_GAINED | |
| SBS | Chr9 | 1406388 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5071076 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 6314720 | C-A | Homo | INTERGENIC | |
| SBS | Chr10 | 8300228 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12381781 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 17522385 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 25568059 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7588275 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9440686 | C-A | Homo | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 1484001 | 1560000 | 75999 | 16 |
| Deletion | Chr10 | 2232757 | 2232759 | 2 | |
| Deletion | Chr6 | 8904219 | 8904223 | 4 | |
| Deletion | Chr8 | 9315423 | 9315429 | 6 | |
| Deletion | Chr2 | 9510001 | 9562000 | 51999 | 3 |
| Deletion | Chr2 | 9924850 | 9924852 | 2 | |
| Deletion | Chr6 | 12236890 | 12236891 | 1 | |
| Deletion | Chr11 | 17822834 | 17822835 | 1 | |
| Deletion | Chr10 | 19331778 | 19331787 | 9 | |
| Deletion | Chr5 | 21658491 | 21658497 | 6 | |
| Deletion | Chr1 | 22299955 | 22299956 | 1 | |
| Deletion | Chr2 | 22538359 | 22538360 | 1 | OsKitaake02g218600 |
| Deletion | Chr2 | 26276663 | 26276664 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 17647287 | 17647291 | 3 | |
| Insertion | Chr2 | 29830062 | 29830065 | 2 | |
| Insertion | Chr4 | 22236299 | 22236302 | 2 | |
| Insertion | Chr12 | 25053075 | 25053077 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 9655921 | 10076620 |