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| Mutant Information |
|---|
| Mutant Name | FN_812-4-1 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_812-4-1 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 30919115 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 35970359 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24878415 | A-C | Homo | INTERGENIC | |
| SBS | Chr2 | 27208124 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 27696450 | A-G | Homo | INTRON | |
| SBS | Chr2 | 27824749 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 36945386 | T-C | Homo | INTRON | |
| SBS | Chr3 | 20167796 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 23241398 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 27768079 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31363117 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 7820520 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12152179 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 1385392 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 6235512 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7100758 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 8098870 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 17309141 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 27111924 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 1691093 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 1691094 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g023800 |
| SBS | Chr7 | 10190855 | G-C | Homo | INTERGENIC | |
| SBS | Chr7 | 10847352 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11548312 | T-A | Homo | INTERGENIC | |
| SBS | Chr8 | 19241471 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3986787 | G-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr9 | 5613852 | G-C | Homo | INTERGENIC | |
| SBS | Chr9 | 6447944 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8982719 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g052400 |
| SBS | Chr9 | 12088739 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 14518529 | C-T | Homo | UTR_5_PRIME | |
| SBS | Chr9 | 15511301 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 19626890 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g160700 |
| SBS | Chr10 | 1044341 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 5066624 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 21726992 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8398381 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 9067459 | T-C | Homo | INTERGENIC | |
| SBS | Chr12 | 17257798 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 19944050 | A-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 1787197 | 1787198 | 1 | |
| Deletion | Chr4 | 1807244 | 1807245 | 1 | |
| Deletion | Chr3 | 5306001 | 5344000 | 37999 | 5 |
| Deletion | Chr4 | 6306848 | 6306852 | 4 | |
| Deletion | Chr1 | 11102497 | 11102506 | 9 | |
| Deletion | Chr3 | 20826904 | 20826909 | 5 | |
| Deletion | Chr4 | 22312273 | 22312275 | 2 | |
| Deletion | Chr3 | 22449150 | 22449157 | 7 | OsKitaake03g244100 |
| Deletion | Chr12 | 26160657 | 26160675 | 18 | |
| Deletion | Chr4 | 27389286 | 27389296 | 10 | |
| Deletion | Chr1 | 29077620 | 29077621 | 1 | |
| Deletion | Chr3 | 30153603 | 30153607 | 4 | |
| Deletion | Chr4 | 30586019 | 30586026 | 7 | |
| Deletion | Chr4 | 33537112 | 33537117 | 5 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43148451 | 43148454 | 2 | |
| Insertion | Chr3 | 14519147 | 14519150 | 2 | |
| Insertion | Chr4 | 22073080 | 22073084 | 3 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 5619491 | Chr6 | 7814797 | OsKitaake06g099800 |
| Translocation | Chr10 | 5619557 | Chr6 | 7814796 | OsKitaake06g099800 |