Search Kitaake

Mutant Information

Mutant Name	FN_814-7-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_814-7-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4864520 C-T Homo INTERGENIC
SBS Chr1 13665442 A-G Homo INTERGENIC
SBS Chr1 27552643 A-G Homo INTERGENIC
SBS Chr2 432988 C-A Hetero INTERGENIC
SBS Chr2 7292314 G-T Hetero INTERGENIC
SBS Chr2 30265496 T-C Hetero INTERGENIC
SBS Chr3 7422161 G-A Homo INTERGENIC
SBS Chr3 7582737 C-T Homo INTERGENIC
SBS Chr3 7582738 A-T Homo INTERGENIC
SBS Chr3 19170208 C-T Hetero INTERGENIC
SBS Chr3 27116215 C-G Homo INTERGENIC
SBS Chr3 31036145 G-C Hetero INTRON
SBS Chr3 34898254 T-C Hetero INTRON
SBS Chr3 35201538 G-A Hetero INTERGENIC
SBS Chr4 8973042 T-A Homo INTERGENIC
SBS Chr4 23033169 G-A Hetero INTRON
SBS Chr4 23171891 A-T Hetero INTERGENIC
SBS Chr5 21227458 C-A Hetero INTERGENIC
SBS Chr5 21992171 A-G Homo INTRON
SBS Chr5 22092194 A-G Homo INTERGENIC
SBS Chr5 28976417 C-T Homo INTERGENIC
SBS Chr6 15810157 G-A Hetero INTERGENIC
SBS Chr6 28027611 A-T Hetero INTERGENIC
SBS Chr6 28376142 A-C Hetero INTRON
SBS Chr6 29484547 G-A Hetero INTRON
SBS Chr7 7151519 C-A Homo UTR_3_PRIME
SBS Chr7 24506059 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g218200
SBS Chr8 273011 G-C Homo INTRON
SBS Chr8 6204044 T-A Homo INTERGENIC
SBS Chr8 13827151 C-T Homo INTERGENIC
SBS Chr8 19429905 T-C Homo INTERGENIC
SBS Chr8 27290190 T-C Homo INTERGENIC
SBS Chr9 9385851 C-T Hetero INTERGENIC
SBS Chr10 4742813 A-G Hetero INTERGENIC
SBS Chr11 10285052 G-A Homo INTERGENIC
SBS Chr11 20194109 C-T Hetero INTERGENIC
SBS Chr12 5656421 A-T Homo INTERGENIC
SBS Chr12 6019526 G-A Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1369001 1451000 81999 15
Deletion Chr11 1374088 1374089 1
Deletion Chr11 3926075 3926076 1
Deletion Chr3 4442525 4442526 1
Deletion Chr4 4579736 4579744 8
Deletion Chr12 5832603 5832604 1
Deletion Chr8 7676464 7676469 5
Deletion Chr8 12683071 12683081 10
Deletion Chr4 13557742 13557766 24
Deletion Chr5 16429958 16429959 1
Deletion Chr1 17908990 17908994 4
Deletion Chr7 18594920 18594922 2
Deletion Chr12 19819394 19819399 5
Deletion Chr8 19972821 19972830 9
Deletion Chr6 29487124 29487125 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 21495425 21495430 4
Insertion Chr5 28066933 28066935 1
Insertion Chr6 12650871 12650874 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 16908808 16946362 OsKitaake06g159200
Inversion Chr6 16908811 16946369 OsKitaake06g159200

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1369997 Chr6 31006875 OsKitaake06g294200
Translocation Chr11 1445069 Chr6 31006881 OsKitaake06g294200
Translocation Chr7 6768316 Chr5 21227521
Translocation Chr7 6768326 Chr5 21224764
Translocation Chr4 23042443 Chr3 8910827 2
Translocation Chr4 23042448 Chr3 8910838 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4864520	C-T	Homo	INTERGENIC
SBS	Chr1	13665442	A-G	Homo	INTERGENIC
SBS	Chr1	27552643	A-G	Homo	INTERGENIC
SBS	Chr2	432988	C-A	Hetero	INTERGENIC
SBS	Chr2	7292314	G-T	Hetero	INTERGENIC
SBS	Chr2	30265496	T-C	Hetero	INTERGENIC
SBS	Chr3	7422161	G-A	Homo	INTERGENIC
SBS	Chr3	7582737	C-T	Homo	INTERGENIC
SBS	Chr3	7582738	A-T	Homo	INTERGENIC
SBS	Chr3	19170208	C-T	Hetero	INTERGENIC
SBS	Chr3	27116215	C-G	Homo	INTERGENIC
SBS	Chr3	31036145	G-C	Hetero	INTRON
SBS	Chr3	34898254	T-C	Hetero	INTRON
SBS	Chr3	35201538	G-A	Hetero	INTERGENIC
SBS	Chr4	8973042	T-A	Homo	INTERGENIC
SBS	Chr4	23033169	G-A	Hetero	INTRON
SBS	Chr4	23171891	A-T	Hetero	INTERGENIC
SBS	Chr5	21227458	C-A	Hetero	INTERGENIC
SBS	Chr5	21992171	A-G	Homo	INTRON
SBS	Chr5	22092194	A-G	Homo	INTERGENIC
SBS	Chr5	28976417	C-T	Homo	INTERGENIC
SBS	Chr6	15810157	G-A	Hetero	INTERGENIC
SBS	Chr6	28027611	A-T	Hetero	INTERGENIC
SBS	Chr6	28376142	A-C	Hetero	INTRON
SBS	Chr6	29484547	G-A	Hetero	INTRON
SBS	Chr7	7151519	C-A	Homo	UTR_3_PRIME
SBS	Chr7	24506059	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g218200
SBS	Chr8	273011	G-C	Homo	INTRON
SBS	Chr8	6204044	T-A	Homo	INTERGENIC
SBS	Chr8	13827151	C-T	Homo	INTERGENIC
SBS	Chr8	19429905	T-C	Homo	INTERGENIC
SBS	Chr8	27290190	T-C	Homo	INTERGENIC
SBS	Chr9	9385851	C-T	Hetero	INTERGENIC
SBS	Chr10	4742813	A-G	Hetero	INTERGENIC
SBS	Chr11	10285052	G-A	Homo	INTERGENIC
SBS	Chr11	20194109	C-T	Hetero	INTERGENIC
SBS	Chr12	5656421	A-T	Homo	INTERGENIC
SBS	Chr12	6019526	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1369001	1451000	81999	15
Deletion	Chr11	1374088	1374089	1
Deletion	Chr11	3926075	3926076	1
Deletion	Chr3	4442525	4442526	1
Deletion	Chr4	4579736	4579744	8
Deletion	Chr12	5832603	5832604	1
Deletion	Chr8	7676464	7676469	5
Deletion	Chr8	12683071	12683081	10
Deletion	Chr4	13557742	13557766	24
Deletion	Chr5	16429958	16429959	1
Deletion	Chr1	17908990	17908994	4
Deletion	Chr7	18594920	18594922	2
Deletion	Chr12	19819394	19819399	5
Deletion	Chr8	19972821	19972830	9
Deletion	Chr6	29487124	29487125	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	16908808	16946362	OsKitaake06g159200
Inversion	Chr6	16908811	16946369	OsKitaake06g159200

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes