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Mutant Information

Mutant Name	FN_815-4-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_815-4-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14037914 A-T Hetero INTERGENIC
SBS Chr1 26393068 C-T Homo INTERGENIC
SBS Chr1 33610856 C-T Hetero INTERGENIC
SBS Chr1 34569917 T-A Hetero INTERGENIC
SBS Chr2 6686992 T-C Homo INTERGENIC
SBS Chr2 11384676 T-C Homo UTR_3_PRIME
SBS Chr2 18261718 C-T Hetero INTRON
SBS Chr3 1035814 T-A Homo INTERGENIC
SBS Chr3 22517585 C-T Hetero INTERGENIC
SBS Chr3 25279552 G-A Hetero INTERGENIC
SBS Chr4 18684746 G-A Hetero INTERGENIC
SBS Chr4 24599863 A-G Homo INTERGENIC
SBS Chr4 25966442 T-C Homo INTERGENIC
SBS Chr6 281399 G-A Homo INTERGENIC
SBS Chr6 9269760 C-G Homo INTERGENIC
SBS Chr6 10855989 A-T Homo INTERGENIC
SBS Chr6 20260776 T-G Hetero INTERGENIC
SBS Chr6 25198378 T-A Homo INTERGENIC
SBS Chr7 17222254 C-T Homo INTERGENIC
SBS Chr7 24351478 G-C Homo INTERGENIC
SBS Chr7 27901344 A-G Homo INTERGENIC
SBS Chr8 14262831 A-G Homo INTERGENIC
SBS Chr9 3177600 T-C Homo INTERGENIC
SBS Chr10 428686 G-A Homo INTERGENIC
SBS Chr10 7849179 C-T Hetero INTERGENIC
SBS Chr10 11830768 C-A Hetero INTERGENIC
SBS Chr10 21553701 G-A Hetero INTERGENIC
SBS Chr11 6495635 G-T Hetero INTERGENIC
SBS Chr11 16184830 G-T Hetero INTERGENIC
SBS Chr11 23264544 G-T Homo INTERGENIC
SBS Chr11 28015876 T-G Hetero INTERGENIC
SBS Chr12 1548746 A-C Homo INTERGENIC
SBS Chr12 24308140 C-T Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 2039375 2039378 3
Deletion Chr1 3767379 3767387 8
Deletion Chr8 6601001 6619000 17999
Deletion Chr2 6667987 6667996 9
Deletion Chr6 8296899 8296900 1
Deletion Chr2 14599756 14599762 6
Deletion Chr10 14803133 14803137 4
Deletion Chr10 21636283 21636284 1
Deletion Chr12 22005097 22005098 1
Deletion Chr12 22514698 22514711 13 OsKitaake12g176600
Deletion Chr2 27769619 27769622 3 OsKitaake02g279200
Deletion Chr5 29292280 29292292 12
Deletion Chr3 31960069 31960079 10

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18489594 18489601 6
Insertion Chr3 7646275 7646278 2
Insertion Chr3 21722063 21722066 2
Insertion Chr4 20202830 20202834 3
Insertion Chr4 33669529 33669532 2
Insertion Chr7 13814644 13814647 2
Insertion Chr11 17793565 17793568 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 3574664 3619256 OsKitaake12g050400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14037914	A-T	Hetero	INTERGENIC
SBS	Chr1	26393068	C-T	Homo	INTERGENIC
SBS	Chr1	33610856	C-T	Hetero	INTERGENIC
SBS	Chr1	34569917	T-A	Hetero	INTERGENIC
SBS	Chr2	6686992	T-C	Homo	INTERGENIC
SBS	Chr2	11384676	T-C	Homo	UTR_3_PRIME
SBS	Chr2	18261718	C-T	Hetero	INTRON
SBS	Chr3	1035814	T-A	Homo	INTERGENIC
SBS	Chr3	22517585	C-T	Hetero	INTERGENIC
SBS	Chr3	25279552	G-A	Hetero	INTERGENIC
SBS	Chr4	18684746	G-A	Hetero	INTERGENIC
SBS	Chr4	24599863	A-G	Homo	INTERGENIC
SBS	Chr4	25966442	T-C	Homo	INTERGENIC
SBS	Chr6	281399	G-A	Homo	INTERGENIC
SBS	Chr6	9269760	C-G	Homo	INTERGENIC
SBS	Chr6	10855989	A-T	Homo	INTERGENIC
SBS	Chr6	20260776	T-G	Hetero	INTERGENIC
SBS	Chr6	25198378	T-A	Homo	INTERGENIC
SBS	Chr7	17222254	C-T	Homo	INTERGENIC
SBS	Chr7	24351478	G-C	Homo	INTERGENIC
SBS	Chr7	27901344	A-G	Homo	INTERGENIC
SBS	Chr8	14262831	A-G	Homo	INTERGENIC
SBS	Chr9	3177600	T-C	Homo	INTERGENIC
SBS	Chr10	428686	G-A	Homo	INTERGENIC
SBS	Chr10	7849179	C-T	Hetero	INTERGENIC
SBS	Chr10	11830768	C-A	Hetero	INTERGENIC
SBS	Chr10	21553701	G-A	Hetero	INTERGENIC
SBS	Chr11	6495635	G-T	Hetero	INTERGENIC
SBS	Chr11	16184830	G-T	Hetero	INTERGENIC
SBS	Chr11	23264544	G-T	Homo	INTERGENIC
SBS	Chr11	28015876	T-G	Hetero	INTERGENIC
SBS	Chr12	1548746	A-C	Homo	INTERGENIC
SBS	Chr12	24308140	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	2039375	2039378	3
Deletion	Chr1	3767379	3767387	8
Deletion	Chr8	6601001	6619000	17999
Deletion	Chr2	6667987	6667996	9
Deletion	Chr6	8296899	8296900	1
Deletion	Chr2	14599756	14599762	6
Deletion	Chr10	14803133	14803137	4
Deletion	Chr10	21636283	21636284	1
Deletion	Chr12	22005097	22005098	1
Deletion	Chr12	22514698	22514711	13	OsKitaake12g176600
Deletion	Chr2	27769619	27769622	3	OsKitaake02g279200
Deletion	Chr5	29292280	29292292	12
Deletion	Chr3	31960069	31960079	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3574664	3619256	OsKitaake12g050400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes