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Mutant Information

Mutant Name	FN_822-5-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_822-5-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27851702 C-T Homo INTERGENIC
SBS Chr2 211904 A-T Hetero INTRON
SBS Chr2 2846156 C-T Hetero INTERGENIC
SBS Chr2 3671755 C-T Hetero INTERGENIC
SBS Chr2 30592894 G-A Hetero INTERGENIC
SBS Chr3 2516395 C-T Homo INTERGENIC
SBS Chr3 6254080 C-A Homo INTRON
SBS Chr3 6351345 G-T Homo INTRON
SBS Chr3 7306189 C-T Hetero INTRON
SBS Chr3 29737835 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g310600
SBS Chr4 17060244 G-A Homo INTERGENIC
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 2395470 C-T Homo INTERGENIC
SBS Chr5 12428975 C-T Hetero INTERGENIC
SBS Chr6 25684243 A-G Hetero INTERGENIC
SBS Chr7 19711687 C-A Hetero INTERGENIC
SBS Chr8 6612150 C-T Homo INTERGENIC
SBS Chr8 24695079 C-T Hetero INTERGENIC
SBS Chr9 8343138 G-C Homo INTERGENIC
SBS Chr9 11371083 G-C Homo INTERGENIC
SBS Chr9 13554354 A-T Homo INTERGENIC
SBS Chr9 15848028 G-A Homo INTERGENIC
SBS Chr9 19041066 C-G Homo INTERGENIC
SBS Chr10 22555719 G-A Hetero INTERGENIC
SBS Chr11 3995386 A-G Hetero INTERGENIC
SBS Chr11 12101563 T-A Hetero INTERGENIC
SBS Chr11 13686154 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 19079634 G-A Homo INTERGENIC
SBS Chr11 19490936 G-T Hetero INTERGENIC
SBS Chr11 19490937 G-T Hetero INTERGENIC
SBS Chr11 20721313 A-T Hetero INTRON
SBS Chr11 22152659 C-A Hetero INTERGENIC
SBS Chr11 22369970 A-G Hetero INTERGENIC
SBS Chr11 27592837 A-C Hetero INTERGENIC
SBS Chr11 29110466 A-G Hetero INTERGENIC
SBS Chr12 487071 G-A Hetero START_GAINED
SBS Chr12 2551249 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g038100

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3726248 3726252 4
Deletion Chr6 7340762 7340763 1
Deletion Chr11 10257352 10257358 6
Deletion Chr4 13565073 13565081 8
Deletion Chr7 19685364 19685366 2
Deletion Chr4 20795754 20795761 7
Deletion Chr2 28242804 28242807 3
Deletion Chr2 29904146 29904147 1 OsKitaake02g302900

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 22920059 22920062 2
Insertion Chr6 5878477 5878480 2
Insertion Chr7 23502520 23502522 1
Insertion Chr10 18689207 18689210 2
Insertion Chr10 20248201 20248204 2
Insertion Chr10 22480988 22480991 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 12903824 13663714
Inversion Chr11 12903829 13663715
Inversion Chr7 17140385 17291791
Inversion Chr7 17140389 17291792

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7226951 Chr1 19041058
Translocation Chr6 7226957 Chr1 19041608
Translocation Chr11 12903824 Chr5 3267989

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27851702	C-T	Homo	INTERGENIC
SBS	Chr2	211904	A-T	Hetero	INTRON
SBS	Chr2	2846156	C-T	Hetero	INTERGENIC
SBS	Chr2	3671755	C-T	Hetero	INTERGENIC
SBS	Chr2	30592894	G-A	Hetero	INTERGENIC
SBS	Chr3	2516395	C-T	Homo	INTERGENIC
SBS	Chr3	6254080	C-A	Homo	INTRON
SBS	Chr3	6351345	G-T	Homo	INTRON
SBS	Chr3	7306189	C-T	Hetero	INTRON
SBS	Chr3	29737835	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g310600
SBS	Chr4	17060244	G-A	Homo	INTERGENIC
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	2395470	C-T	Homo	INTERGENIC
SBS	Chr5	12428975	C-T	Hetero	INTERGENIC
SBS	Chr6	25684243	A-G	Hetero	INTERGENIC
SBS	Chr7	19711687	C-A	Hetero	INTERGENIC
SBS	Chr8	6612150	C-T	Homo	INTERGENIC
SBS	Chr8	24695079	C-T	Hetero	INTERGENIC
SBS	Chr9	8343138	G-C	Homo	INTERGENIC
SBS	Chr9	11371083	G-C	Homo	INTERGENIC
SBS	Chr9	13554354	A-T	Homo	INTERGENIC
SBS	Chr9	15848028	G-A	Homo	INTERGENIC
SBS	Chr9	19041066	C-G	Homo	INTERGENIC
SBS	Chr10	22555719	G-A	Hetero	INTERGENIC
SBS	Chr11	3995386	A-G	Hetero	INTERGENIC
SBS	Chr11	12101563	T-A	Hetero	INTERGENIC
SBS	Chr11	13686154	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	19079634	G-A	Homo	INTERGENIC
SBS	Chr11	19490936	G-T	Hetero	INTERGENIC
SBS	Chr11	19490937	G-T	Hetero	INTERGENIC
SBS	Chr11	20721313	A-T	Hetero	INTRON
SBS	Chr11	22152659	C-A	Hetero	INTERGENIC
SBS	Chr11	22369970	A-G	Hetero	INTERGENIC
SBS	Chr11	27592837	A-C	Hetero	INTERGENIC
SBS	Chr11	29110466	A-G	Hetero	INTERGENIC
SBS	Chr12	487071	G-A	Hetero	START_GAINED
SBS	Chr12	2551249	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g038100

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3726248	3726252	4
Deletion	Chr6	7340762	7340763	1
Deletion	Chr11	10257352	10257358	6
Deletion	Chr4	13565073	13565081	8
Deletion	Chr7	19685364	19685366	2
Deletion	Chr4	20795754	20795761	7
Deletion	Chr2	28242804	28242807	3
Deletion	Chr2	29904146	29904147	1	OsKitaake02g302900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	12903824	13663714
Inversion	Chr11	12903829	13663715
Inversion	Chr7	17140385	17291791
Inversion	Chr7	17140389	17291792

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes