Search Kitaake

Mutant Information

Mutant Name	FN_826-4-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_826-4-1 Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22247071	G-A	Homo	INTERGENIC
SBS	Chr1	22247074	G-C	Homo	INTERGENIC
SBS	Chr1	28926420	G-A	Hetero	INTERGENIC
SBS	Chr1	41665404	A-T	Hetero	INTERGENIC
SBS	Chr2	2979879	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g042400
SBS	Chr2	8031476	A-G	Homo	INTERGENIC
SBS	Chr2	18061725	C-A	Homo	INTERGENIC
SBS	Chr2	22567012	C-A	Homo	INTERGENIC
SBS	Chr2	31302892	C-T	Hetero	INTERGENIC
SBS	Chr3	28147618	T-A	Homo	INTERGENIC
SBS	Chr3	35062741	C-A	Homo	INTRON
SBS	Chr4	4412448	C-T	Hetero	INTERGENIC
SBS	Chr4	20926267	T-A	Hetero	INTERGENIC
SBS	Chr4	20970154	G-T	Homo	INTERGENIC
SBS	Chr5	28429195	G-T	Homo	INTERGENIC
SBS	Chr6	13591017	C-T	Homo	INTERGENIC
SBS	Chr7	11230429	C-T	Hetero	INTERGENIC
SBS	Chr7	19522526	T-C	Hetero	INTRON
SBS	Chr9	8409248	T-A	Homo	INTERGENIC
SBS	Chr10	13274222	C-T	Hetero	INTERGENIC
SBS	Chr10	19928842	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g149600
SBS	Chr12	42829	C-T	Hetero	INTERGENIC
SBS	Chr12	8244410	G-T	Hetero	INTERGENIC
SBS	Chr12	14663597	C-A	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3494955	3494957	2
Deletion	Chr11	3668160	3668169	9
Deletion	Chr3	3785519	3785520	1
Deletion	Chr9	3827087	3827107	20
Deletion	Chr6	4353637	4353652	15
Deletion	Chr3	7246102	7246126	24
Deletion	Chr10	10199559	10199566	7
Deletion	Chr3	11340134	11340138	4
Deletion	Chr9	17027001	17191000	163999	29
Deletion	Chr10	18136414	18136418	4
Deletion	Chr11	24083548	24083561	13
Deletion	Chr1	33814398	33814403	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr7	4597772	4597774	1
Insertion	Chr7	11568283	11568286	2