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Mutant Information

Mutant Name	FN_827-1 [Download]
Generation	M3
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN_827-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 44

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10763684 C-T Hetero INTERGENIC
SBS Chr1 14960120 T-G Hetero INTERGENIC
SBS Chr1 23673410 A-G Hetero INTERGENIC
SBS Chr1 23674333 A-T Hetero INTERGENIC
SBS Chr1 29573624 A-G Hetero INTRON
SBS Chr2 15458953 C-T Hetero INTERGENIC
SBS Chr2 16675844 A-T Hetero INTERGENIC
SBS Chr2 17836748 C-G Homo INTERGENIC
SBS Chr2 27271177 C-T Homo INTERGENIC
SBS Chr3 2779073 C-T Homo INTERGENIC
SBS Chr3 5382996 T-C Hetero INTRON
SBS Chr3 12565027 T-C Homo INTERGENIC
SBS Chr3 12672932 T-A Homo INTRON
SBS Chr3 13606413 G-A Hetero INTERGENIC
SBS Chr3 16879081 T-C Homo INTERGENIC
SBS Chr3 31524855 A-G Hetero INTERGENIC
SBS Chr3 35851948 G-T Hetero INTERGENIC
SBS Chr4 2129675 C-T Hetero INTERGENIC
SBS Chr4 13006040 G-A Hetero INTERGENIC
SBS Chr4 35779225 A-C Hetero INTERGENIC
SBS Chr4 35779226 C-T Hetero INTERGENIC
SBS Chr5 10649779 G-A Hetero INTERGENIC
SBS Chr6 4567130 T-G Homo INTERGENIC
SBS Chr6 12429435 G-T Hetero INTERGENIC
SBS Chr6 13787887 G-T Hetero INTERGENIC
SBS Chr6 20308286 A-G Homo INTERGENIC
SBS Chr6 29548064 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g274700
SBS Chr6 29548068 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g274700
SBS Chr7 5918961 G-A Hetero INTERGENIC
SBS Chr8 3973300 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g045700
SBS Chr8 25271376 C-A Homo INTERGENIC
SBS Chr8 27190949 T-C Homo UTR_3_PRIME
SBS Chr9 8320125 G-A Homo INTERGENIC
SBS Chr9 12324007 C-A Homo INTERGENIC
SBS Chr10 8603481 G-T Hetero INTERGENIC
SBS Chr10 9554725 T-A Homo INTRON
SBS Chr11 1987132 G-A Homo INTERGENIC
SBS Chr11 6544309 T-C Homo NON_SYNONYMOUS_CODING OsKitaake11g077800
SBS Chr11 15939031 G-A Homo UTR_3_PRIME
SBS Chr11 21426406 C-G Hetero INTERGENIC
SBS Chr11 27973171 C-T Hetero INTERGENIC
SBS Chr12 14010183 G-A Hetero INTERGENIC
SBS Chr12 18078122 G-A Hetero INTERGENIC
SBS Chr12 18078125 A-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 220285 220292 7
Deletion Chr2 3053001 3086000 32999 6
Deletion Chr1 3142001 3223000 80999 11
Deletion Chr1 3225001 3316000 90999 13
Deletion Chr2 11764376 11764380 4
Deletion Chr3 11881841 11881843 2
Deletion Chr10 11917835 11917852 17
Deletion Chr12 12661949 12661950 1
Deletion Chr10 13151873 13151874 1
Deletion Chr6 16038001 16089000 50999 6
Deletion Chr11 20421729 20421730 1
Deletion Chr9 22469653 22469654 1
Deletion Chr6 27698226 27698238 12
Deletion Chr3 31909001 31939000 29999 6

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 26687184 26687187 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 19239745 19704717 OsKitaake06g173800
Inversion Chr6 19239756 19704716 OsKitaake06g173800
Inversion Chr4 35494194 35613143

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 18677598 Chr2 3054086 2
Translocation Chr11 18677839 Chr4 25917289 2
Translocation Chr11 18677850 Chr4 35613077 OsKitaake11g145000
Translocation Chr4 25917291 Chr2 3054068 2
Translocation Chr11 26410717 Chr4 35494183
Translocation Chr11 28269004 Chr2 3049251

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10763684	C-T	Hetero	INTERGENIC
SBS	Chr1	14960120	T-G	Hetero	INTERGENIC
SBS	Chr1	23673410	A-G	Hetero	INTERGENIC
SBS	Chr1	23674333	A-T	Hetero	INTERGENIC
SBS	Chr1	29573624	A-G	Hetero	INTRON
SBS	Chr2	15458953	C-T	Hetero	INTERGENIC
SBS	Chr2	16675844	A-T	Hetero	INTERGENIC
SBS	Chr2	17836748	C-G	Homo	INTERGENIC
SBS	Chr2	27271177	C-T	Homo	INTERGENIC
SBS	Chr3	2779073	C-T	Homo	INTERGENIC
SBS	Chr3	5382996	T-C	Hetero	INTRON
SBS	Chr3	12565027	T-C	Homo	INTERGENIC
SBS	Chr3	12672932	T-A	Homo	INTRON
SBS	Chr3	13606413	G-A	Hetero	INTERGENIC
SBS	Chr3	16879081	T-C	Homo	INTERGENIC
SBS	Chr3	31524855	A-G	Hetero	INTERGENIC
SBS	Chr3	35851948	G-T	Hetero	INTERGENIC
SBS	Chr4	2129675	C-T	Hetero	INTERGENIC
SBS	Chr4	13006040	G-A	Hetero	INTERGENIC
SBS	Chr4	35779225	A-C	Hetero	INTERGENIC
SBS	Chr4	35779226	C-T	Hetero	INTERGENIC
SBS	Chr5	10649779	G-A	Hetero	INTERGENIC
SBS	Chr6	4567130	T-G	Homo	INTERGENIC
SBS	Chr6	12429435	G-T	Hetero	INTERGENIC
SBS	Chr6	13787887	G-T	Hetero	INTERGENIC
SBS	Chr6	20308286	A-G	Homo	INTERGENIC
SBS	Chr6	29548064	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g274700
SBS	Chr6	29548068	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g274700
SBS	Chr7	5918961	G-A	Hetero	INTERGENIC
SBS	Chr8	3973300	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g045700
SBS	Chr8	25271376	C-A	Homo	INTERGENIC
SBS	Chr8	27190949	T-C	Homo	UTR_3_PRIME
SBS	Chr9	8320125	G-A	Homo	INTERGENIC
SBS	Chr9	12324007	C-A	Homo	INTERGENIC
SBS	Chr10	8603481	G-T	Hetero	INTERGENIC
SBS	Chr10	9554725	T-A	Homo	INTRON
SBS	Chr11	1987132	G-A	Homo	INTERGENIC
SBS	Chr11	6544309	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g077800
SBS	Chr11	15939031	G-A	Homo	UTR_3_PRIME
SBS	Chr11	21426406	C-G	Hetero	INTERGENIC
SBS	Chr11	27973171	C-T	Hetero	INTERGENIC
SBS	Chr12	14010183	G-A	Hetero	INTERGENIC
SBS	Chr12	18078122	G-A	Hetero	INTERGENIC
SBS	Chr12	18078125	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	220285	220292	7
Deletion	Chr2	3053001	3086000	32999	6
Deletion	Chr1	3142001	3223000	80999	11
Deletion	Chr1	3225001	3316000	90999	13
Deletion	Chr2	11764376	11764380	4
Deletion	Chr3	11881841	11881843	2
Deletion	Chr10	11917835	11917852	17
Deletion	Chr12	12661949	12661950	1
Deletion	Chr10	13151873	13151874	1
Deletion	Chr6	16038001	16089000	50999	6
Deletion	Chr11	20421729	20421730	1
Deletion	Chr9	22469653	22469654	1
Deletion	Chr6	27698226	27698238	12
Deletion	Chr3	31909001	31939000	29999	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	19239745	19704717	OsKitaake06g173800
Inversion	Chr6	19239756	19704716	OsKitaake06g173800
Inversion	Chr4	35494194	35613143

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes