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| Mutant Information |
|---|
| Mutant Name | FN_829-2-5 [Download] |
| Generation | M3 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN_829-2-5 Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5042343 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 13608655 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16611957 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 19621010 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 22754295 | C-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 24829706 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 43635998 | G-A | Hetero | UTR_5_PRIME | |
| SBS | Chr2 | 5514579 | T-C | Homo | INTRON | |
| SBS | Chr2 | 6902623 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 3855778 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 18929139 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 21516627 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3441930 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3650682 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 17342250 | A-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g085200 |
| SBS | Chr4 | 22087834 | T-A | Homo | INTERGENIC | |
| SBS | Chr4 | 33544656 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 7528635 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24611925 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 29016046 | G-C | Hetero | START_GAINED | |
| SBS | Chr6 | 24015162 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g213000 |
| SBS | Chr6 | 29246320 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 19461837 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 4821913 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 5101285 | G-C | Homo | INTERGENIC | |
| SBS | Chr8 | 7243835 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17095102 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8345106 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 14521398 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 230045 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8608016 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 11726496 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 14801967 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17581970 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 10606907 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2267064 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 24847567 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 15108702 | 15108703 | 1 | |
| Deletion | Chr9 | 17447609 | 17447611 | 2 | |
| Deletion | Chr7 | 18267655 | 18267660 | 5 | |
| Deletion | Chr2 | 20099588 | 20099589 | 1 | |
| Deletion | Chr5 | 20200585 | 20200588 | 3 | |
| Deletion | Chr3 | 22536131 | 22536140 | 9 | |
| Deletion | Chr7 | 22717001 | 22769000 | 51999 | 11 |
| Deletion | Chr1 | 26328481 | 26328484 | 3 | |
| Deletion | Chr7 | 28068202 | 28068209 | 7 | |
| Deletion | Chr6 | 28977837 | 28977838 | 1 | OsKitaake06g267900 |
| Deletion | Chr2 | 31566970 | 31566971 | 1 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr8 | 21405234 | 21405237 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 31078293 | Chr1 | 28862443 | 2 |